View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_11 (Length: 565)

Name: NF20775_high_11
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_11
NF20775_high_11
[»] chr4 (50 HSPs)
chr4 (18-257)||(2326874-2327113)
chr4 (274-459)||(2326625-2326810)
chr4 (296-402)||(14334370-14334476)
chr4 (296-459)||(26955306-26955485)
chr4 (124-224)||(21691316-21691416)
chr4 (286-369)||(6487372-6487454)
chr4 (320-385)||(29510104-29510169)
chr4 (285-393)||(51967243-51967350)
chr4 (283-393)||(56424005-56424114)
chr4 (126-203)||(49138952-49139029)
chr4 (283-359)||(29966446-29966521)
chr4 (319-406)||(33138799-33138887)
chr4 (127-203)||(54705508-54705584)
chr4 (318-385)||(32889894-32889961)
chr4 (126-245)||(33456265-33456384)
chr4 (283-369)||(21486479-21486564)
chr4 (283-393)||(25013410-25013519)
chr4 (177-243)||(25318989-25319055)
chr4 (283-369)||(40162753-40162838)
chr4 (126-199)||(2635054-2635127)
chr4 (324-393)||(23671404-23671473)
chr4 (318-386)||(871808-871875)
chr4 (134-222)||(35064962-35065050)
chr4 (318-386)||(49501219-49501287)
chr4 (318-386)||(49507284-49507352)
chr4 (318-393)||(8084207-8084282)
chr4 (124-199)||(29904121-29904196)
chr4 (283-369)||(3860238-3860323)
chr4 (283-369)||(3868995-3869080)
chr4 (283-393)||(26448595-26448704)
chr4 (127-197)||(33843583-33843653)
chr4 (142-203)||(46344948-46345009)
chr4 (318-386)||(32322513-32322581)
chr4 (322-386)||(41725564-41725628)
chr4 (318-386)||(49834520-49834588)
chr4 (319-366)||(24966576-24966623)
chr4 (318-393)||(29469161-29469236)
chr4 (319-382)||(46286708-46286771)
chr4 (283-369)||(9972737-9972822)
chr4 (131-209)||(16551853-16551931)
chr4 (318-384)||(29855963-29856029)
chr4 (283-369)||(40487713-40487797)
chr4 (126-203)||(48045818-48045896)
chr4 (320-402)||(54341591-54341673)
chr4 (518-555)||(2326534-2326571)
chr4 (130-191)||(50061764-50061825)
chr4 (319-384)||(50517192-50517257)
chr4 (318-366)||(23987644-23987692)
chr4 (321-393)||(42937441-42937513)
chr4 (126-250)||(43868027-43868151)
[»] chr3 (42 HSPs)
chr3 (296-448)||(27994744-27994896)
chr3 (123-243)||(25359651-25359770)
chr3 (124-203)||(7262787-7262866)
chr3 (319-386)||(25049870-25049937)
chr3 (283-369)||(9818616-9818701)
chr3 (320-389)||(4962763-4962832)
chr3 (296-420)||(40198698-40198822)
chr3 (318-393)||(21386512-21386587)
chr3 (320-386)||(20833344-20833410)
chr3 (124-256)||(35264475-35264607)
chr3 (318-389)||(45602449-45602520)
chr3 (318-393)||(49296114-49296189)
chr3 (127-225)||(3845207-3845305)
chr3 (280-386)||(7665552-7665657)
chr3 (320-386)||(49458358-49458424)
chr3 (320-386)||(51737374-51737440)
chr3 (130-203)||(12674908-12674981)
chr3 (296-393)||(40064254-40064351)
chr3 (320-389)||(43172927-43172996)
chr3 (128-241)||(48410891-48411004)
chr3 (130-203)||(52141362-52141435)
chr3 (126-202)||(3776430-3776506)
chr3 (318-386)||(48379595-48379663)
chr3 (127-187)||(52363957-52364017)
chr3 (123-203)||(52925728-52925808)
chr3 (318-402)||(54629296-54629380)
chr3 (318-393)||(8598657-8598732)
chr3 (297-360)||(37832549-37832612)
chr3 (319-369)||(16155163-16155213)
chr3 (320-386)||(17946675-17946741)
chr3 (320-370)||(19386941-19386991)
chr3 (121-203)||(21007758-21007840)
chr3 (296-374)||(25931858-25931936)
chr3 (324-386)||(52617659-52617721)
chr3 (296-406)||(53645328-53645438)
chr3 (121-205)||(25129636-25129721)
chr3 (171-248)||(44958678-44958755)
chr3 (126-198)||(40339076-40339148)
chr3 (318-366)||(50761807-50761855)
chr3 (320-384)||(50902998-50903062)
chr3 (126-194)||(51285450-51285518)
chr3 (318-386)||(52810803-52810871)
[»] chr1 (32 HSPs)
chr1 (298-418)||(8122188-8122308)
chr1 (296-408)||(40706178-40706289)
chr1 (318-389)||(49971627-49971698)
chr1 (283-430)||(18954450-18954597)
chr1 (130-209)||(36780228-36780307)
chr1 (130-225)||(47322001-47322096)
chr1 (283-369)||(7798485-7798570)
chr1 (321-459)||(2293327-2293475)
chr1 (321-386)||(32760133-32760198)
chr1 (318-393)||(3583583-3583658)
chr1 (318-385)||(5494783-5494850)
chr1 (124-203)||(45660866-45660944)
chr1 (319-386)||(3593266-3593333)
chr1 (283-369)||(1108337-1108422)
chr1 (320-386)||(47371609-47371675)
chr1 (160-240)||(2099768-2099846)
chr1 (129-202)||(35681824-35681897)
chr1 (127-203)||(15478118-15478194)
chr1 (123-199)||(36529393-36529469)
chr1 (131-227)||(44801384-44801479)
chr1 (318-386)||(46328432-46328500)
chr1 (318-393)||(4005086-4005161)
chr1 (130-257)||(28083951-28084078)
chr1 (160-202)||(30557441-30557483)
chr1 (320-386)||(45273015-45273081)
chr1 (320-389)||(52182347-52182416)
chr1 (320-384)||(8140919-8140983)
chr1 (126-194)||(14644588-14644656)
chr1 (322-366)||(21248529-21248573)
chr1 (324-368)||(27257910-27257954)
chr1 (321-389)||(28403977-28404045)
chr1 (318-386)||(49231453-49231521)
[»] scaffold0168 (1 HSPs)
scaffold0168 (127-240)||(31718-31831)
[»] chr5 (23 HSPs)
chr5 (320-389)||(16548877-16548946)
chr5 (283-393)||(2675102-2675211)
chr5 (321-402)||(15286551-15286634)
chr5 (130-224)||(39097159-39097253)
chr5 (125-209)||(22226347-22226431)
chr5 (283-369)||(34909556-34909641)
chr5 (127-243)||(5468666-5468781)
chr5 (321-385)||(29716827-29716891)
chr5 (320-360)||(29758706-29758746)
chr5 (286-393)||(21238787-21238893)
chr5 (122-240)||(29922781-29922899)
chr5 (324-393)||(5651215-5651284)
chr5 (126-199)||(35108130-35108203)
chr5 (318-386)||(1460833-1460901)
chr5 (318-386)||(4240153-4240221)
chr5 (143-203)||(35957858-35957918)
chr5 (318-393)||(7125193-7125268)
chr5 (123-218)||(11647971-11648065)
chr5 (123-205)||(2090141-2090223)
chr5 (283-369)||(33892894-33892979)
chr5 (324-369)||(24258535-24258580)
chr5 (320-384)||(13926380-13926444)
chr5 (318-402)||(37014301-37014385)
[»] chr6 (27 HSPs)
chr6 (127-243)||(5724707-5724823)
chr6 (283-406)||(7835377-7835500)
chr6 (124-203)||(4910797-4910876)
chr6 (283-369)||(8779632-8779717)
chr6 (134-243)||(25195441-25195550)
chr6 (321-369)||(13461374-13461422)
chr6 (127-222)||(1499758-1499853)
chr6 (296-402)||(15381529-15381636)
chr6 (129-203)||(31812203-31812277)
chr6 (126-199)||(7952830-7952903)
chr6 (320-389)||(31535091-31535160)
chr6 (296-369)||(31996299-31996372)
chr6 (319-406)||(28900851-28900939)
chr6 (126-190)||(31710512-31710576)
chr6 (318-393)||(1463698-1463773)
chr6 (318-393)||(6788098-6788173)
chr6 (318-393)||(10113807-10113882)
chr6 (332-406)||(33641301-33641376)
chr6 (322-384)||(7497548-7497610)
chr6 (320-386)||(16438706-16438772)
chr6 (283-357)||(21199518-21199591)
chr6 (126-224)||(31725686-31725783)
chr6 (125-203)||(33136600-33136677)
chr6 (321-386)||(31975686-31975751)
chr6 (139-191)||(3481943-3481995)
chr6 (127-175)||(7280357-7280405)
chr6 (128-196)||(34910896-34910964)
[»] chr2 (28 HSPs)
chr2 (121-222)||(33047650-33047751)
chr2 (283-369)||(38413506-38413591)
chr2 (320-385)||(13833107-13833172)
chr2 (318-389)||(40829634-40829705)
chr2 (296-398)||(30850244-30850346)
chr2 (122-203)||(3716752-3716833)
chr2 (121-202)||(7629748-7629829)
chr2 (285-369)||(13898442-13898525)
chr2 (285-369)||(14039059-14039142)
chr2 (318-386)||(25288610-25288678)
chr2 (318-385)||(214945-215012)
chr2 (296-406)||(12877662-12877773)
chr2 (318-393)||(18899956-18900031)
chr2 (281-387)||(11153384-11153489)
chr2 (320-386)||(15926378-15926444)
chr2 (126-208)||(32595887-32595969)
chr2 (320-393)||(3991773-3991846)
chr2 (158-203)||(8800814-8800859)
chr2 (172-253)||(12036998-12037079)
chr2 (324-393)||(15224234-15224303)
chr2 (126-243)||(30503100-30503217)
chr2 (160-222)||(15928532-15928594)
chr2 (324-393)||(2308742-2308811)
chr2 (320-369)||(33262853-33262902)
chr2 (124-197)||(42774958-42775031)
chr2 (320-384)||(1833743-1833807)
chr2 (318-366)||(10657877-10657925)
chr2 (318-386)||(33136063-33136131)
[»] chr8 (30 HSPs)
chr8 (145-245)||(13384729-13384829)
chr8 (319-386)||(24067105-24067172)
chr8 (322-389)||(41393958-41394025)
chr8 (124-189)||(10367890-10367955)
chr8 (126-243)||(26668443-26668560)
chr8 (318-386)||(32497988-32498056)
chr8 (127-207)||(32100965-32101045)
chr8 (128-224)||(32994320-32994416)
chr8 (282-369)||(1527956-1528042)
chr8 (124-203)||(7533690-7533765)
chr8 (283-393)||(28317099-28317208)
chr8 (169-243)||(37684339-37684413)
chr8 (324-393)||(6388153-6388222)
chr8 (320-369)||(37131338-37131387)
chr8 (318-386)||(10295025-10295093)
chr8 (326-386)||(27878669-27878729)
chr8 (326-386)||(28018850-28018910)
chr8 (128-203)||(15677915-15677990)
chr8 (185-240)||(35525362-35525417)
chr8 (318-389)||(43166359-43166430)
chr8 (320-386)||(8029875-8029941)
chr8 (318-384)||(9288182-9288248)
chr8 (318-384)||(42305292-42305358)
chr8 (322-359)||(12522483-12522520)
chr8 (125-202)||(39648263-39648340)
chr8 (130-191)||(44141186-44141247)
chr8 (330-386)||(12522542-12522598)
chr8 (322-386)||(17234716-17234780)
chr8 (318-386)||(31625755-31625823)
chr8 (320-384)||(43308196-43308260)
[»] chr7 (30 HSPs)
chr7 (279-375)||(27148805-27148900)
chr7 (318-384)||(48136922-48136988)
chr7 (318-387)||(43172152-43172221)
chr7 (318-386)||(37972569-37972637)
chr7 (283-366)||(35313521-35313603)
chr7 (283-368)||(14732347-14732431)
chr7 (318-370)||(26201840-26201892)
chr7 (321-385)||(41827776-41827840)
chr7 (126-202)||(45004876-45004952)
chr7 (318-369)||(12740815-12740866)
chr7 (318-393)||(14741424-14741499)
chr7 (142-224)||(17111782-17111864)
chr7 (321-386)||(11735224-11735289)
chr7 (318-406)||(32884216-32884305)
chr7 (320-369)||(33497144-33497193)
chr7 (318-370)||(16709433-16709485)
chr7 (318-370)||(17683669-17683721)
chr7 (318-402)||(29893417-29893501)
chr7 (278-369)||(21024025-21024115)
chr7 (296-360)||(42043349-42043409)
chr7 (318-384)||(28034542-28034608)
chr7 (320-386)||(37328354-37328420)
chr7 (129-203)||(40491472-40491546)
chr7 (320-386)||(44256447-44256513)
chr7 (318-383)||(8675776-8675841)
chr7 (318-386)||(4639908-4639976)
chr7 (318-366)||(29585959-29586007)
chr7 (318-350)||(33383119-33383151)
chr7 (296-360)||(37392684-37392748)
chr7 (318-366)||(39028532-39028580)
[»] scaffold1128 (1 HSPs)
scaffold1128 (318-393)||(932-1007)
[»] scaffold0042 (1 HSPs)
scaffold0042 (318-385)||(57752-57819)
[»] scaffold0246 (2 HSPs)
scaffold0246 (283-393)||(1331-1440)
scaffold0246 (283-369)||(25652-25736)
[»] scaffold0110 (1 HSPs)
scaffold0110 (318-389)||(39319-39390)
[»] scaffold0433 (1 HSPs)
scaffold0433 (283-369)||(354-439)
[»] scaffold0573 (1 HSPs)
scaffold0573 (319-406)||(8855-8943)
[»] scaffold1504 (1 HSPs)
scaffold1504 (318-384)||(1313-1379)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 2327113 - 2326874
Alignment:
Q  18 attataatcaattagttaatccagtcattactgttattgattcgagtcatttggtataatcgattcgctcaataaattaaatgagatgttatttaaacaa 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||| |    
T  2327113 attataatcaattagttaatccagtcattactattattgattcgagtcattcggtataatcgattcgctcagtagattaaatgagatgttatttgaacga 2327014  T
Q  118 tcgtttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaat 217  Q
    | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  2327013 ttgtttttagtgtatgtttggtttcacttttagtgggaccataattaattatggaggtatagaattgattatgacatgtttggttgatttcatgaagaat 2326914  T
Q  218 tgattctgtcaccagaattgattctattcgaaactagaat 257  Q
    || |||||||||||||||||||||||||||||||||||||    
T  2326913 tgtttctgtcaccagaattgattctattcgaaactagaat 2326874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 274 - 459
Target Start/End: Complemental strand, 2326810 - 2326625
Alignment:
Q  274 tgaatgcaatgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattt 373  Q
    ||||||||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||| |||||||||||||||| |||||||||||  |||    
T  2326810 tgaatgcaatgtttcacaaatccgagtgttaaaacgtaaactcgcctgaatttacgtttttaggtaccaaaatcgtgtaaacttggatgtaaacttgttt 2326711  T
Q  374 tctagtaaaatcgaaaagttgaccgagttaacaagacttaaaatcgggtaaactcgtacgaatttgcgagtttactttttaaaaaa 459  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2326710 tctagtaaaattgaaaagttgaccgagttaacaagacttaaaatcgggtaaactcgtacgaatttgcgagttaactttttaaaaaa 2326625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 14334370 - 14334476
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||  |||| | ||||||||| ||||||||    
T  14334370 cgagtgttaaaacgtaaacttgcccgagtttacgtttttaggtaccaaaatcgcgtaaactcggacgtaaacttgttttttggtaaaatcggaaagttga 14334469  T
Q  396 ccgagtt 402  Q
    || ||||    
T  14334470 cctagtt 14334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 459
Target Start/End: Original strand, 26955306 - 26955485
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc------attttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||  | ||||| ||       |||| | ||||||||||||    
T  26955306 cgagtgttaaaacgtaaacttgcccgaatttacgtttttaggtttcaaaatcgtgtaaattcaaaggtaaattcgttttttttttttggtaaaatcgaaa 26955405  T
Q  390 ag----------ttgaccgagttaacaagacttaaaatcgggtaaactcgtacgaatttgcgagtttactttttaaaaaa 459  Q
    ||          ||||||||||||||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||||||||    
T  26955406 agtttgtcgagtttgaccgagttaacacggcttaaaatcggataaactcgttcgagtttgcgagtttaccttttaaaaaa 26955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 21691416 - 21691316
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattc 223  Q
    |||||| |||||||||| ||||| ||||||| ||| |||| ||| ||||||| |||||||||||||||||| |||||||| ||||| | || ||||||||    
T  21691416 ttagtgcatgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattc 21691317  T
Q  224 t 224  Q
    |    
T  21691316 t 21691316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 6487454 - 6487372
Alignment:
Q  286 tccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  6487454 tccacaaatc-gagtgttaacacgtaaacttgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 6487372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 29510169 - 29510104
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||    
T  29510169 cgagtttacgtgtttaggtatcaaaatcgtgttaactctgatgtaaactcaatttctggtaaaatc 29510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 51967243 - 51967350
Alignment:
Q  285 ttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||| ||||||||| ||||||||| |  |||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| | || ||||    
T  51967243 ttccacaaatc-gagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaat 51967341  T
Q  385 cgaaaagtt 393  Q
    |||||||||    
T  51967342 cgaaaagtt 51967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 56424114 - 56424005
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||| | || |||||| ||||||||| | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| |||| ||    
T  56424114 tgttccacaaagc-gaatgttaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttagtgaa 56424016  T
Q  383 atcgaaaagtt 393  Q
    |||| ||||||    
T  56424015 atcggaaagtt 56424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 49139029 - 49138952
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||||| ||||| || || ||||| |||| ||| | ||||| |||||||||||||||||||||||||||    
T  49139029 agtgtatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctgacatgtttggttg 49138952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 29966521 - 29966446
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcgg 359  Q
    ||||||||||||| |||||||||  |||||||| | ||||||||||||||||||||  ||||| |||||||||||||    
T  29966521 tgttccacaaatc-gagtgttaactcgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgtaaactcgg 29966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 33138799 - 33138887
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttgaccgagttaaca 406  Q
    |||||||||||| |||||||| ||||||||||| |||||||| ||||||||  ||||| ||||||||| || | ||||| |||||||||    
T  33138799 ccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgactgagttaaca 33138887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 54705584 - 54705508
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||||| ||||| ||||||||||| ||||   |||| ||||||| ||||||||| ||||||||||||||    
T  54705584 gtgtatgtttggttccacttctagaggggccaaaattggctatgaaggtatataattgattcagacatgtttggttg 54705508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 32889894 - 32889961
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||||||||||| |||||||| ||||||||||| ||||  |||||||||||| ||||| ||||||||    
T  32889894 accgagtttacgtgtttaggtaccaaaatcgtgttaactttgatgtaaactcaatttctggtaaaatc 32889961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 33456265 - 33456384
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    ||||||||||||||| ||||| ||||||| | |||||| ||| || | || ||||||||||| |||||| ||| |||| |||||   ||||||||||| |    
T  33456265 agtgtatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgattccg 33456364  T
Q  226 tcaccagaattgattctatt 245  Q
    || | |||||| ||||||||    
T  33456365 tctctagaatttattctatt 33456384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 21486479 - 21486564
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||||||||  |||||||| |  |||||||||||||||||||  ||||| |||||||||||| | ||||||||    
T  21486479 tgttccacaaatc-gagtgttaactcgtaaactcgttcgagtttacgtttttaggtggcaaaaccgtgtaaactcgaaggtaaactc 21486564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 393
Target Start/End: Original strand, 25013410 - 25013519
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||||| ||||||||| ||||||||| |  |||||||||||||||||||  ||||| | ||| ||||||||  |||||||| ||| || | ||    
T  25013410 tgttccacaaatc-gagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacatgttaactcggagctaaactcaatttttaatgaa 25013508  T
Q  383 atcgaaaagtt 393  Q
    |||| ||||||    
T  25013509 atcggaaagtt 25013519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 25318989 - 25319055
Alignment:
Q  177 tagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgattcta 243  Q
    ||||||||||| ||||||||||||||| | ||| | |||||||||| |||| |||||||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattcta 25319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 40162753 - 40162838
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||||||||  |||||||| | ||||||||||||||||||||  ||||| |||||||| |||||  |||||||    
T  40162753 tgttccacaaatc-gagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaactc 40162838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 2635054 - 2635127
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttg 199  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| | || || || |||||||| |||||||||||    
T  2635054 agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttg 2635127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 23671473 - 23671404
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||  ||||| || |||||||||||||    
T  23671473 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaatcgaaaagtt 23671404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 871808 - 871875
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||||||||||||||| | ||||||||| |||||||| ||||||||  ||||| |||||||||    
T  871808 accgagtttacgtttttaggta-ccaaatcgtgtcaactcggaggtaaactcgatttctggtaaaatcg 871875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 35064962 - 35065050
Alignment:
Q  134 tttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgatt 222  Q
    ||||||| ||||| | |||||| || |||| ||||||||||| ||||||||||| |||||| |||||||| | ||| | ||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgatt 35065050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 49501287 - 49501219
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  49501287 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcg 49501219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 49507352 - 49507284
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  49507352 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcg 49507284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 8084207 - 8084282
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||||||||||||| ||||||    
T  8084207 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtt 8084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 29904121 - 29904196
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttg 199  Q
    ||||||||||||||||||||||| ||||||  ||| |||| ||| | ||| |||| |||||||||| |||||||||    
T  29904121 ttagtgtatgtttggtttcacttctagaggatccacaattgattctagagatataaaattgattctaacatgtttg 29904196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 3860323 - 3860238
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||| ||||||||| ||||||||| |  |||||||||||||||| ||  ||||| ||||| |||||||| ||||||||    
T  3860323 tgtttcacaaatc-gagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactc 3860238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 3869080 - 3868995
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||| ||||||||| ||||||||| |  |||||||||||||||| ||  ||||| ||||| |||||||| ||||||||    
T  3869080 tgtttcacaaatc-gagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactc 3868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 393
Target Start/End: Original strand, 26448595 - 26448704
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||||| |||||||||  |||||||| |  ||||||||| |||||||||  ||||| | |||||||||||| ||||||| | ||| | || ||    
T  26448595 tgttccacaaatc-gagtgttaactcgtaaactcgctcgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaacttaatttttggtgaa 26448693  T
Q  383 atcgaaaagtt 393  Q
    |||| ||||||    
T  26448694 atcggaaagtt 26448704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 33843583 - 33843653
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtt 197  Q
    |||||||||||||||||||| ||||||| ||| |||| ||| | ||||| ||||||| ||||||| |||||    
T  33843583 gtgtatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctgaaatgtt 33843653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 46345009 - 46344948
Alignment:
Q  142 cacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||| ||||||| ||| |||| ||||||||||| || |||| |||||||||||||||||||    
T  46345009 cacttctagagggcccaaaattgattatggaggtgtataattaattctgacatgtttggttg 46344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 32322513 - 32322581
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| || || || ||||||||  ||||| |||||||||    
T  32322513 accgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcggtttctggtaaaatcg 32322581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 41725564 - 41725628
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  41725564 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcg 41725628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 49834588 - 49834520
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||| ||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  49834588 accgagtttacgtttttagctacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcg 49834520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 24966623 - 24966576
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    |||||||||||| |||||||| ||||||||||| |||||||| |||||    
T  24966623 ccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaagtaaa 24966576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 29469161 - 29469236
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  29469161 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 29469236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 46286708 - 46286771
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||||||||||||| ||||||||||| ||| |  | ||||||||  |||||||||||    
T  46286708 ccgagtttacgtttttaggtaccaaaatcgtgttaacactaaggtaaactcgatttctagtaaa 46286771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 9972737 - 9972822
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||| ||||  |||||| | |  |||||||| ||||||||||  ||||| |||||||||||||| ||||||||    
T  9972737 tgttccacaaatc-gagtattaactcgtaaattcgctcgagtttatgtttttaggtggcaaaaacgtgtaaactcggaggtaaactc 9972822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 16551853 - 16551931
Alignment:
Q  131 atgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcg 209  Q
    |||||||||| |||||| |||| |  || |||| ||| | ||||| |||||||||||||||||||| |||||| |||||    
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctgacatgtatggttgctgtcg 16551931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 29855963 - 29856029
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||||||||| |||  |||||||||| ||||| || ||||||||  ||||| |||||||    
T  29855963 accgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaat 29856029  T

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Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 40487797 - 40487713
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||||||||  ||||||||   | ||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  40487797 tgttccacaaatc-gagtgttaactcgtaaactct-ctgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 40487713  T

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Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 48045896 - 48045818
Alignment:
Q  126 agtgtatgtttggtttcacttttagagggg-ccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||||| ||||| |||||||| ||| |||| ||| | |||   |||||||||||| ||||||||||||||    
T  48045896 agtgtatgtttggttccacttctagagggggccaaaattgattctagagaagtagaattgattcggacatgtttggttg 48045818  T

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Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 54341591 - 54341673
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgaccgagtt 402  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||||| ||  ||||| ||||||| |||| ||| | ||||||    
T  54341591 cgagtttacatttttaggtacaaaaatcgtgtaaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtt 54341673  T

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Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 2326571 - 2326534
Alignment:
Q  518 aaaaaacgtacaacataacgttgctcttctctgctcct 555  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  2326571 aaaaaacatacaacataacgttgctcttctcttctcct 2326534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 50061825 - 50061764
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctga 191  Q
    ||||||||||| ||||| ||||||  ||| |||| ||| ||||||| |||||||||||||||    
T  50061825 tatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctga 50061764  T

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Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 50517192 - 50517257
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||| |||||||| ||||||||||| ||||  || ||||||||  ||||| |||||||    
T  50517192 ccgagtttacgtgtttaggtaccaaaatcgtgttaactttgaggtaaactcgatttctggtaaaat 50517257  T

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Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 23987644 - 23987692
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||||||||  |||||||||| ||||| || |||||    
T  23987644 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaa 23987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 42937513 - 42937441
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    |||||||||| |||||||   |||| ||| | |||||||| ||||||||  ||||| ||||||||||||||||    
T  42937513 gagtttacgtatttaggtgctaaaagcgttttaactcggaggtaaactcgatttctggtaaaatcgaaaagtt 42937441  T

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Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 43868027 - 43868151
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    ||||||||||||| |  |||||||||| ||| | |||| |||||| || | || || | ||||| ||||||||||||| | ||  | |||||| ||| ||    
T  43868027 agtgtatgtttggctctacttttagagtggctaaaattgattatgaagttgtaaaactaattctaacatgtttggttgctttctagtagaattaattttg 43868126  T
Q  226 tcaccagaattgattctattcgaaa 250  Q
    || ||| ||||||||||||| ||||    
T  43868127 tctccacaattgattctatttgaaa 43868151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 27994896 - 27994744
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    |||||||||||||||||||| | |||||||||||| |||||| | ||||||| |||||||||||| | |||||| |||| | |||||||| || ||||||    
T  27994896 cgagtgttaaaacgtaaactcgcccgagtttacgtgtttaggaaccaaaatcatgtaaactcggacgaaaactcgttttttggtaaaatcaaagagttga 27994797  T
Q  396 ccgagttaacaagacttaaaatcgggtaaactcgtacgaatttgcgagtttac 448  Q
    |||| |||  | | |||||||| |||||||||||| | | |||||||||||||    
T  27994796 ccgatttagtacggcttaaaattgggtaaactcgtcctagtttgcgagtttac 27994744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 25359770 - 25359651
Alignment:
Q  123 tttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgatt 222  Q
    |||| ||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||| ||||  |||||||||||| ||||   |  ||||||||    
T  25359770 tttaatgtatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttctaccatgtttggttgctgtc-aaataaattgatt 25359672  T
Q  223 ctgtcaccagaattgattcta 243  Q
    ||| | |||||||||||||||    
T  25359671 ctgcctccagaattgattcta 25359651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 7262787 - 7262866
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||||||||||||| ||||| |||||| |||| ||| | |||||  ||||||||||||||||||||||||||    
T  7262787 ttagtgtatgtttggtttcactattagatgggccaaaattgattttagaggtgaagaattgattctgacatgtttggttg 7262866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 25049870 - 25049937
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||||||  |||||||||||||||    
T  25049870 ccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgatttctagtaaaatcg 25049937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 9818701 - 9818616
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  9818701 tgttccacaaatc-gagtgttaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 9818616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 4962832 - 4962763
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||  |||| |||||||||||||    
T  4962832 cgagtttacgtttttaggtatcaaaatcgtgttaacttggaggtaaactcgatttcaagtaaaatcgaaa 4962763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 420
Target Start/End: Complemental strand, 40198822 - 40198698
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    ||||||||||||||||||   | | |||| ||  ||||||| |  |||||||||||| |||||||  ||||||  |||| | ||||||||||||||||||    
T  40198822 cgagtgttaaaacgtaaatccgtctgagtctatctttttagatgccaaaatcgtgtagactcggagataaacttgttttttggtaaaatcgaaaagttga 40198723  T
Q  396 ccgagttaacaagacttaaaatcgg 420  Q
     |||||||||| |||||||||||||    
T  40198722 acgagttaacacgacttaaaatcgg 40198698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 21386587 - 21386512
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||| |||||||||||||||||||||| ||||  || ||||||||  ||||| ||||||||||||||||    
T  21386587 accgagtttacatttttaggtatcaaaatcgtgttaacttagaggtaaactcgatttctggtaaaatcgaaaagtt 21386512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 20833344 - 20833410
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||  |||||||||| ||||| || ||||||||| ||||| |||||||||    
T  20833344 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatcg 20833410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 35264607 - 35264475
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattc 223  Q
    |||||||||||||||||||| || ||||| || || |||| ||| | ||||  || |||||||||| ||||||||||||| | |||   |||||||||||    
T  35264607 ttagtgtatgtttggtttcatttctagagtggtcaaaatttattctagaggagtaaaattgattctcacatgtttggttgctctcgaagagaattgattc 35264508  T
Q  224 tgtcaccagaattgattctattcgaaactagaa 256  Q
    || | ||| |  |||||||| | ||||||||||    
T  35264507 tgcctccaaatatgattctacttgaaactagaa 35264475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 45602520 - 45602449
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    ||||| ||||||||||| ||||| ||||| |||| |||||| | ||||||||| ||||| ||||||||||||    
T  45602520 accgaatttacgtttttgggtattaaaattgtgtcaactcgtaggtaaactcaatttctggtaaaatcgaaa 45602449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 49296114 - 49296189
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||||||||||    
T  49296114 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcgaaaagtt 49296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 3845305 - 3845207
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    |||||||||||||| ||||||| |||   ||| |||| ||| | ||||| ||||||||||| ||||||||||| ||||| ||  | |||||||||||||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctg 3845207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 7665552 - 7665657
Alignment:
Q  280 caatgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagt 379  Q
    |||||||||||||||| |||||||||  ||   | || ||| ||||||||||||||| || ||||||||||| |||||||| ||||||||  ||| | ||    
T  7665552 caatgttccacaaatc-gagtgttaactcgccgaatttacctagtttacgtttttagctaccaaaatcgtgttaactcggaggtaaactcgatttttggt 7665650  T
Q  380 aaaatcg 386  Q
    |||||||    
T  7665651 aaaatcg 7665657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 49458358 - 49458424
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||| ||||||||||||||| |||| ||||| || ||||||||  ||||| |||||||||    
T  49458358 cgagtttacgtgtttaggtatcaaaattgtgttaactctgaagtaaactcgatttctggtaaaatcg 49458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 51737440 - 51737374
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||| ||||||||||  |||||||||| ||||| || ||||||||  |||||||||||||||    
T  51737440 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcg 51737374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 12674908 - 12674981
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||| | | ||||| |||||| |||| ||| ||||||| |||||||||| || |||||||||||||    
T  12674908 tatgtttggttttagtcttagatgggccaaaattgattctggaggtgtagaattgatcctaacatgtttggttg 12674981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 40064254 - 40064351
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||  |||||| | | ||||||||||||||||||||  ||||| |||||||||| ||| ||||| | | ||| | || |||||||||||||    
T  40064254 cgagtgttaattcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgtaaacttggaggtaaatttagtttttggtgaaatcgaaaagtt 40064351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 43172927 - 43172996
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||| || |||||||| |||||||||||  ||||||| ||||||||  ||||| ||||||||||||    
T  43172927 cgagtttatgtgtttaggtaccaaaatcgtgttgactcggaggtaaactcgatttctggtaaaatcgaaa 43172996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 48411004 - 48410891
Alignment:
Q  128 tgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtc 227  Q
    ||||||||||||| |||||||||||||| || |||| ||| |  | || | ||||||||||||| ||||||| ||| | ||| | |||||||||| || |    
T  48411004 tgtatgtttggttacacttttagaggggtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgcc 48410905  T
Q  228 accagaattgattc 241  Q
     ||| |||||||||    
T  48410904 tccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 52141435 - 52141362
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||| ||||| ||||||| |||||||| ||| | ||||| |||||| |||||||| |||||| ||||    
T  52141435 tatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctgatatgtttagttg 52141362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 3776430 - 3776506
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    ||||||| ||||||| ||||||| |||| | || ||||  |||| ||||| ||||||||||| ||||||||||||||    
T  3776430 agtgtatatttggttccacttttggaggagacaaaattggttatagaggtgtagaattgattttgacatgtttggtt 3776506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 48379595 - 48379663
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| || || || ||||||||  ||||| |||||||||    
T  48379595 accgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcgatttctggtaaaatcg 48379663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 52363957 - 52364017
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgatt 187  Q
    |||||||||||||| ||||||||||||| ||| |||| ||||| ||||| || ||||||||    
T  52363957 gtgtatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 52925808 - 52925728
Alignment:
Q  123 tttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||| |||| ||||||| |||| | || |||| ||| | ||||| || |||||||| |||||||||||||||    
T  52925808 tttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggttg 52925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 54629296 - 54629380
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgaccgagtt 402  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  |||||  ||||| ||||| ||| | ||||||    
T  54629296 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctgataaaagcgaaaggtttaacgagtt 54629380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 8598657 - 8598732
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  8598657 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 8598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 37832549 - 37832612
Alignment:
Q  297 gagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcgga 360  Q
    |||||||||  |||||||| | ||||||||||||||||||||  ||||| |||||||| |||||    
T  37832549 gagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcgga 37832612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 16155163 - 16155213
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||||||||||| ||||||||||| ||||| || ||||||||    
T  16155163 ccgaatttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactc 16155213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 17946675 - 17946741
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||  |||||| ||| ||||| || ||||||||  ||||| |||||||||    
T  17946675 cgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcggtttctggtaaaatcg 17946741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 19386991 - 19386941
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactca 370  Q
    ||||||||||| ||||||| ||||||  |||| ||||||||||||||||||    
T  19386991 cgagtttacgtatttaggtgtcaaaaatgtgttaactcggatgtaaactca 19386941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 21007840 - 21007758
Alignment:
Q  121 tttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||| || ||||||||||||||| |||| |||| |||| ||| |  || |||| |||||||| |||||||||| ||||    
T  21007840 tttttagtggatatttggtttcacttttggaggagccaaaattgattttaaagatatataattgattttgacatgtttagttg 21007758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 25931858 - 25931936
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcatttt 374  Q
    |||||||||||||||||| | |   ||||||| |||||||| | ||||||||||||| ||||| | ||||| |||||||    
T  25931858 cgagtgttaaaacgtaaattcgtttgagtttatgtttttagatgtcaaaatcgtgtatactcgaaggtaaattcatttt 25931936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 386
Target Start/End: Complemental strand, 52617721 - 52617659
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  52617721 tttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcg 52617659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 53645438 - 53645328
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    ||||||||||  |||||||| | | ||||| ||||||||||||  ||||| ||| ||||||| || ||||||||| ||| | || |||||| ||||||      
T  53645438 cgagtgttaactcgtaaactcgtctgagttaacgtttttaggtggcaaaaacgtataaactcagaggtaaactcagtttttggtgaaatcggaaagtttg 53645339  T
Q  396 ccgagttaaca 406  Q
     ||||||||||    
T  53645338 acgagttaaca 53645328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 25129721 - 25129636
Alignment:
Q  121 tttttagtgtatgtttggtttcacttttagaggggccataattaattatggagg-tatagaattgattctgacatgtttggttgat 205  Q
    ||||||||||||||||||||||| |||| |||||| || |||| ||| | |||| | ||||||||||| |  ||||||||| ||||    
T  25129721 tttttagtgtatgtttggtttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgtttggatgat 25129636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 44958755 - 44958678
Alignment:
Q  171 gaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgattctattcga 248  Q
    ||||| ||||||||||||||||||||||||||| | ||  |  ||||||||| || | ||||| ||||||||| ||||    
T  44958755 gaggtgtagaattgattctgacatgtttggttgctctcagggggaattgattttgcctccagagttgattctactcga 44958678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 40339076 - 40339148
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgttt 198  Q
    |||||||||||||||| |||||| || |||||| |||| ||| | ||||  || |||||||| ||||||||||    
T  40339076 agtgtatgtttggtttaacttttggaagggccaaaattgattttagaggagtataattgattttgacatgttt 40339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 50761855 - 50761807
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||||||||  |||||||||| ||||| || |||||    
T  50761855 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaa 50761807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 50903062 - 50902998
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||||||| |||  |||||||||| ||||| || ||||||||  ||||| |||||||    
T  50903062 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 50902998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 51285450 - 51285518
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacat 194  Q
    ||||||||||||||| ||||||| |||  |||  |||||||| | ||||| ||||||||||| ||||||    
T  51285450 agtgtatgtttggttccactttttgagtagccgaaattaattctagaggtgtagaattgattttgacat 51285518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 52810803 - 52810871
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  ||||| |||| ||||| || ||||||||   |||| |||||||||    
T  52810803 accgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcgggttctggtaaaatcg 52810871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 8122188 - 8122308
Alignment:
Q  298 agtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgacc 397  Q
    ||||||||||| |||| ||| |||||||||||||||||  || |||||||||||||||||| |  ||||||| |||| | ||||||| ||||||||||||    
T  8122188 agtgttaaaacataaatttgtccgagtttacgtttttaaataccaaaatcgtgtaaactcgaacttaaactcgttttttggtaaaattgaaaagttgacc 8122287  T
Q  398 gagttaacaagacttaaaatc 418  Q
    ||||||||| | |||||||||    
T  8122288 gagttaacacggcttaaaatc 8122308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 40706178 - 40706289
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    |||||||||| || |||| | | |||||||| | |||||||||||||||||||||||||||||||  |||||||||||| | ||||||| ||||||||||    
T  40706178 cgagtgttaatacataaattcgtccgagttt-catttttaggtatcaaaatcgtgtaaactcggacataaactcattttttggtaaaattgaaaagttga 40706276  T
Q  396 ccgagttaacaag 408  Q
     ||||||||||||    
T  40706277 tcgagttaacaag 40706289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 49971698 - 49971627
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||||||||||||    
T  49971698 accgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgttttctggtaaaatcgaaa 49971627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 430
Target Start/End: Original strand, 18954450 - 18954597
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||||| |||||||||  |||||| | | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| | || ||    
T  18954450 tgttccacaaatc-gagtgttaactcgtaaattcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggacgtaaactcggtttttggtgaa 18954548  T
Q  383 atcgaaaag-ttgaccgagttaacaagacttaaaatcgggtaaactcgt 430  Q
    |||| |||| ||||||||||||||| |  ||||| ||| ||||||||||    
T  18954549 atcggaaagtttgaccgagttaacatgtgttaaactcgtgtaaactcgt 18954597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 36780307 - 36780228
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcg 209  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||| ||| ||||||||||| |||||    
T  36780307 tatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgatatgtttggttgttgtcg 36780228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 47322096 - 47322001
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    ||||||||||||||||||||||| |   |||||| ||| ||||||| ||||||||||| |||||||||| |||| ||||| | |||||||||||||    
T  47322096 tatgtttggtttcacttttagagagattataatttattgtggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgattctg 47322001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 7798485 - 7798570
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||| |||| ||||||||| | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  7798485 tgttccacaaatc-gagtattaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 7798570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 459
Target Start/End: Complemental strand, 2293475 - 2293327
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgaccga----------gttaacaagac 410  Q
    ||||||||||| ||||||  |||||||||||||||||| | ||| ||||||||| |  |||||||  ||||||||||||          ||||||| | |    
T  2293475 gagtttacgttgttaggtgccaaaatcgtgtaaactcgaaggtagactcattttttgataaaatcagaaagttgaccgattttgaccaagttaacatggc 2293376  T
Q  411 ttaaaatcgggtaaactcgtacgaatttgcgagtttactttttaaaaaa 459  Q
    ||||||| ||||||| |||| ||||||||||| ||||| ||||||||||    
T  2293375 ttaaaattgggtaaaatcgtccgaatttgcgactttaccttttaaaaaa 2293327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 32760198 - 32760133
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||| ||||||||||| ||||| || ||||||||  |||||||||||||||    
T  32760198 gagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcg 32760133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 3583658 - 3583583
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    |||||||||||||||||||||| | ||||||||| ||||  || ||||||||  ||||||||||||||| ||||||    
T  3583658 accgagtttacgtttttaggtaccgaaatcgtgttaacttagaagtaaactcggtttctagtaaaatcggaaagtt 3583583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 5494850 - 5494783
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    |||||||||||||||||||||| ||||||||||| ||||| || ||||||||  ||||| ||||||||    
T  5494850 accgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatc 5494783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 45660944 - 45660866
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||| ||| ||||| | ||||||||| |||| ||| |||||||  ||||||||||||||||||||||||||    
T  45660944 ttagtgtatgtttcgttccacttctggaggggccaaaattgatt-tggaggtgaagaattgattctgacatgtttggttg 45660866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 3593266 - 3593333
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||  |||||||||||||||||||||| |||||||| ||||| ||  |||||| ||||||||    
T  3593266 ccgagtttatatttttaggtatcaaaatcgtgttaactcggaggtaaattcgatttctaataaaatcg 3593333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 1108337 - 1108422
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||||||||  |||||| | | | ||||||||||||||||||   |||| |||||||||||||| ||||||||    
T  1108337 tgttccacaaatc-gagtgttaactcgtaaattcgtctgagtttacgtttttaggtggtaaaaacgtgtaaactcggaggtaaactc 1108422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 47371675 - 47371609
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||||  ||||||| ||||||||||| |||||||| ||||||||  ||||| |||||||||    
T  47371675 cgagtttacgtacttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcg 47371609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 2099846 - 2099768
Alignment:
Q  160 aattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgatt 240  Q
    |||| ||| ||||||| ||||||||||| |||| |||||| ||||||||| | |||||||||  |||| ||||||||||||    
T  2099846 aattgattctggaggtgtagaattgattatgacttgtttgattgatgtcgagtagaattgat--tgtctccagaattgatt 2099768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 35681824 - 35681897
Alignment:
Q  129 gtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    ||||||||||||||||||||||||||| || | || ||| | || || ||  ||||||||||||||||||||||    
T  35681824 gtatgtttggtttcacttttagaggggtcaaagttgattttagatgtgtaacattgattctgacatgtttggtt 35681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 15478194 - 15478118
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||||| ||||||| |||| |||| | || ||| | | ||| ||||||||||| |||||||||||||||    
T  15478194 gtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttggttg 15478118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 36529393 - 36529469
Alignment:
Q  123 tttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttg 199  Q
    |||| |||||||||| ||||||||||||||| |||| |||||||| | ||  | ||||||| ||| |||||||||||    
T  36529393 tttaatgtatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 36529469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 44801384 - 44801479
Alignment:
Q  131 atgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtc 227  Q
    |||||||||| || ||||||||||   |||||| |||||| |||| |||||||||||| ||||| |||| ||||||||| | | |||||||| ||||    
T  44801384 atgtttggttcca-ttttagagggattataattgattatgaaggtgtagaattgattcggacatatttgattgatgtcgagtataattgattttgtc 44801479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 46328432 - 46328500
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  |||||  ||||||||    
T  46328432 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctgttaaaatcg 46328500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 4005086 - 4005161
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  4005086 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 4005161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 28084078 - 28083951
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcac 229  Q
    |||||||| || ||||| |||||| |||| |||| | | |||  || |||||||||||||||||| |||||||| | ||| | |||||||||| ||||      
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtctt 28083979  T
Q  230 cagaattgattctattcgaaactagaat 257  Q
    |  ||||||||||| | ||| |||||||    
T  28083978 cgtaattgattctacttgaagctagaat 28083951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 30557441 - 30557483
Alignment:
Q  160 aattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||    
T  30557441 aattgattctggaggtgtagaattgattctgacatgtttggtt 30557483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 45273015 - 45273081
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||  ||||| |||| ||||| || ||||||||  ||||| |||||||||    
T  45273015 cgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaatcg 45273081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 52182347 - 52182416
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    ||||||||||||||||||||   ||||||||| || ||||| ||||| ||  ||||| ||||||||||||    
T  52182347 cgagtttacgtttttaggtactgaaatcgtgtcaattcggaggtaaattcgatttctggtaaaatcgaaa 52182416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 8140983 - 8140919
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||||||||||||  |||||||||| ||||| || ||||| ||  ||||| |||||||    
T  8140983 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaat 8140919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 14644588 - 14644656
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacat 194  Q
    |||||||||||||||  ||||||| ||||| || |||| ||||||||| | || |||||||| ||||||    
T  14644588 agtgtatgtttggttcaacttttaaaggggacaaaattgattatggagatgtaaaattgattttgacat 14644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 21248573 - 21248529
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||| |||||||||||| |||| ||| |||||    
T  21248573 agtttacgtttttaggtgtcaaaatcgtgttaacttggaagtaaa 21248529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 27257954 - 27257910
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaact 368  Q
    |||||||||||||||| ||||||||||| ||||| || |||||||    
T  27257954 tttacgtttttaggtaccaaaatcgtgtcaactccgaggtaaact 27257910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 28404045 - 28403977
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||| |||||||||| ||||||||||| |||| | | ||||| ||  |||||| |||||||||||    
T  28404045 gagtttacatttttaggtaccaaaatcgtgttaacttgaaggtaaattcggtttctaataaaatcgaaa 28403977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 49231453 - 49231521
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||| |||||||||||  |||||||||| ||||| || ||||||||  ||||| ||| |||||    
T  49231453 accgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtataatcg 49231521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 31718 - 31831
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgt 226  Q
    |||||||||||||| ||||| ||||| | ||| |||| ||| | ||||| ||||||||||||||||||||||||||| ||||| | | |||||||||||     
T  31718 gtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgc 31817  T
Q  227 caccagaattgatt 240  Q
    | ||| ||||||||    
T  31818 ctccaaaattgatt 31831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 16548946 - 16548877
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||| ||||||||||||    
T  16548946 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcaatttctggtaaaatcgaaa 16548877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 2675211 - 2675102
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    |||| |||||||| ||||||||| ||||||||| | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| | || ||    
T  2675211 tgtttcacaaatc-gagtgttaatacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaa 2675113  T
Q  383 atcgaaaagtt 393  Q
    |||||||||||    
T  2675112 atcgaaaagtt 2675102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 15286634 - 15286551
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc--attttctagtaaaatcgaaaagttgaccgagtt 402  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||   |||| | ||||||||| |||||||||||||||    
T  15286634 gagtttacgtttttaggtgtcaaaatcgtgtaaactcggagataaactctttttttttggtaaaatcggaaagttgaccgagtt 15286551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 39097159 - 39097253
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattct 224  Q
    ||||||||||||||||||||||| | ||  |||| ||||| ||||| ||||||||||| ||||||||||||||| | ||  | ||||||||||||    
T  39097159 tatgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattct 39097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 22226431 - 22226347
Alignment:
Q  125 tagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcg 209  Q
    ||||||||||||| || |||||||||| |  | |||||| ||| |||| || ||||||||||||||||||||||||||| |||||    
T  22226431 tagtgtatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctgacatgtttggttgttgtcg 22226347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 34909556 - 34909641
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| ||||||||| ||||||||| |  |||||||||||||||||||  ||||| ||||| || ||||| ||||||||    
T  34909556 tgttccacaaatc-gagtgttaacacgtaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaattcggaggtaaactc 34909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 5468666 - 5468781
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgt 226  Q
    |||||||||||||| |||||||| ||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||| ||| |||||   | |||||||||||     
T  5468666 gtgtatgtttggttccacttttaaaggggtcataattgattctagaggtgtag-attgattatgacatgtttgattgttgtcgattataattgattctgc 5468764  T
Q  227 caccagaattgattcta 243  Q
    | ||| | |||||||||    
T  5468765 ctccatatttgattcta 5468781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 29716891 - 29716827
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||   ||||| ||||||||    
T  29716891 gagtttacgtttttaggtatcaaaatcgtgttaactcgaaggtaaacttgatttctggtaaaatc 29716827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 29758706 - 29758746
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcgga 360  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  29758706 cgagtttacgtttttaggtatcaaaatcgtgttaactcgga 29758746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 393
Target Start/End: Complemental strand, 21238893 - 21238787
Alignment:
Q  286 tccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    |||||||||| ||||||||| ||||||| | | |||| ||||||||||||| |  ||||| ||||| |||||||| ||||||||  ||| | ||||||||    
T  21238893 tccacaaatc-gagtgttaacacgtaaattcgtccgattttacgtttttagatggcaaaaacgtgttaactcggaggtaaactcggtttttggtaaaatc 21238795  T
Q  386 gaaaagtt 393  Q
    | ||||||    
T  21238794 ggaaagtt 21238787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 29922781 - 29922899
Alignment:
Q  122 ttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgat 221  Q
    |||||||||||||||  || ||||||| |||| | || |||| ||| | |  || ||||||||||| ||||||||||||||| | ||| | |||||||||    
T  29922781 ttttagtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgat 29922880  T
Q  222 tctgtcaccagaattgatt 240  Q
    | |||| | ||||||||||    
T  29922881 tttgtctcaagaattgatt 29922899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 5651284 - 5651215
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||  ||||| || |||| ||||||||    
T  5651284 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaattgaaaagtt 5651215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 35108130 - 35108203
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttg 199  Q
    ||||||| ||||||||||||||||||| || || |||| ||| |||| || || ||||||||||||||| ||||    
T  35108130 agtgtatctttggtttcacttttagagaggtcaaaattgattttggaagtgtataattgattctgacatatttg 35108203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 1460901 - 1460833
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  ||||| |||| ||||| || ||||||||  ||||| |||||||||    
T  1460901 accgagtttacgtttttaggtacaaaaattgtgttaactcagaggtaaactcggtttctggtaaaatcg 1460833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 4240221 - 4240153
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||||||||||||||   |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  4240221 accgagtttacgtttttaggtgcaaaaatcgtgttaactctgaggtaaactccgtttctggtaaaatcg 4240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 35957918 - 35957858
Alignment:
Q  143 acttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||| |||| |||||||||| | | ||| || ||||||||||||||||||||||||    
T  35957918 acttttagatgggctataattaattttagtggtgtaaaattgattctgacatgtttggttg 35957858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 7125268 - 7125193
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  7125268 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 7125193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 11647971 - 11648065
Alignment:
Q  123 tttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaatt 218  Q
    |||||||||| ||||| | ||||| ||||||| |||||||| ||| ||| ||| || |||||||| ||||||||||| ||| ||||| | ||||||    
T  11647971 tttagtgtat-tttggctccacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatt 11648065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 2090223 - 2090141
Alignment:
Q  123 tttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgat 205  Q
    |||| ||| ||||||||||||||| | ||||| ||| |||| |||||| ||||||| || ||||| | | |||||||||||||    
T  2090223 tttaatgtttgtttggtttcacttctggagggaccaaaattgattatgaaggtatacaactgattttaatatgtttggttgat 2090141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 33892979 - 33892894
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||| ||||||||| ||||||| | |  ||| |||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  33892979 tgttgcacaaatc-gagtgttaacacgtaaattcgttcgaatttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 33892894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 24258580 - 24258535
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||||||||  ||||| |||||||||||||| ||||||||    
T  24258580 tttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaactc 24258535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 13926380 - 13926444
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||||||||||||  |||||||||| ||||| || ||||| ||  ||||| |||||||    
T  13926380 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 13926444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 37014301 - 37014385
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgaccgagtt 402  Q
    ||||||||||| ||||||||||  |||||||||| ||||| || ||||| ||  ||||| ||||||| |||| ||| | ||||||    
T  37014301 accgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtt 37014385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 5724823 - 5724707
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgt 226  Q
    |||||||||||||| ||||| ||||||||||| |||||||| | || || |||||||||||||||||||||||| || | ||  | |||||||||| ||     
T  5724823 gtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgc 5724724  T
Q  227 caccagaattgattcta 243  Q
    | ||| |||||||||||    
T  5724723 ctccaaaattgattcta 5724707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 7835500 - 7835377
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||  ||||| ||||| || ||||| ||||||||  ||| | || ||    
T  7835500 tgttccacaaatc-gagtgttaacacgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaagtcggaggtaaactcggtttttggtgaa 7835402  T
Q  383 atcgaaaag-ttgaccgagttaaca 406  Q
    |||| |||| |||||||||||||||    
T  7835401 atcggaaagtttgaccgagttaaca 7835377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 4910797 - 4910876
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||||||| ||||||||||| | | |||||| ||| || | || |||||||||||||||||||||||||||    
T  4910797 ttagtgtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttg 4910876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 8779717 - 8779632
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||| |||||||||  |||||||| | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  8779717 tgtttcacaaatc-gagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 8779632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 25195550 - 25195441
Alignment:
Q  134 tttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccaga 233  Q
    ||||||| ||||| ||||||  ||| |||| ||| |||| || || |||||||||||||||||||||||| | ||| | | ||||||||||| | || ||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccgga 25195451  T
Q  234 attgattcta 243  Q
    ||||||||||    
T  25195450 attgattcta 25195441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 13461374 - 13461422
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  13461374 gagtttacgtttttatgtatcaaaatcgtgtcaactcggaggtaaactc 13461422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 1499758 - 1499853
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgatt 222  Q
    |||||||||||||||||||| ||  ||| ||| ||||||||||| | || ||||||||||| || |||||||| ||| ||| | | ||||||||||    
T  1499758 gtgtatgtttggtttcacttctattgggaccaaaattaattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 1499853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 15381636 - 15381529
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcg-gatgtaaactcattttctagtaaaatcgaaaagttg 394  Q
    |||||||||||||||||||| || | ||||||||||||||||| ||||| |||| |||| | | || |||||||| |||| |  |||||| | |||||||    
T  15381636 cgagtgttaaaacgtaaactcgatcaagtttacgtttttaggtgtcaaagtcgtataaatttgagaggtaaactcgttttttgataaaattggaaagttg 15381537  T
Q  395 accgagtt 402  Q
    | ||||||    
T  15381536 atcgagtt 15381529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 31812203 - 31812277
Alignment:
Q  129 gtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||||||||||| |||    || |||| ||||| ||||| ||||||||||| |||||||||||||||    
T  31812203 gtatgtttggtttcacttttggagtaagcaaaattcattatagaggtctagaattgattttgacatgtttggttg 31812277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 7952903 - 7952830
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttg 199  Q
    |||||||| || ||| ||||| ||||| ||| | |||||||||||||||| || |||||||| |||||||||||    
T  7952903 agtgtatgattagttccacttctagagaggctaaaattaattatggaggtgtaaaattgattatgacatgtttg 7952830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 31535160 - 31535091
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    ||||||||| ||||||||||||||||| |||| ||||| || | ||||||  ||||| ||||||||||||    
T  31535160 cgagtttacatttttaggtatcaaaattgtgttaactctgaggcaaactcgatttctggtaaaatcgaaa 31535091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 31996372 - 31996299
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||| ||| ||||| |  |||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  31996372 cgagtgttaacacgcaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 31996299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 28900939 - 28900851
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttgaccgagttaaca 406  Q
    |||||||||| | |||||||| ||||||||||| ||||| || ||||||||  ||||| ||||||||| || | ||| |||||||||||    
T  28900939 ccgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttggccgagttaaca 28900851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 31710576 - 31710512
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctg 190  Q
    ||||||||||||||| | ||||||||| | |||||||| ||| |||| || ||||||||||||||    
T  31710576 agtgtatgtttggttcctcttttagagagaccataattgattgtggatgtgtagaattgattctg 31710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 1463773 - 1463698
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  1463773 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 1463698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 6788098 - 6788173
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  6788098 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtt 6788173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 10113882 - 10113807
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| |||||||| |||| | ||||||||| ||||||    
T  10113882 accgagtttacgtgtttaggtcctaaaaacgtgttaactcggaggtaaactcgttttttggtaaaatcggaaagtt 10113807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 406
Target Start/End: Complemental strand, 33641376 - 33641301
Alignment:
Q  332 tttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttgaccgagttaaca 406  Q
    |||||||||||||||||||| ||||| |||||||||||| ||  | ||||||||  || | |||||||||||||||    
T  33641376 tttaggtatcaaaatcgtgttaactctgatgtaaactcaattaatggtaaaatcataaggtttgaccgagttaaca 33641301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 7497548 - 7497610
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||||||||||  |||||||||| ||||| || ||||||||  ||||| |||||||    
T  7497548 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 7497610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 16438706 - 16438772
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||  |||||||||| |||| ||| ||||||||   |||| |||||||||    
T  16438706 cgagtttacgtttttaggtacaaaaatcgtgttaacttggaggtaaactcgacttctggtaaaatcg 16438772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 21199518 - 21199591
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactc 357  Q
    ||||||||||||| |||||||||  |||||||||| |  |||||||||||||||||  ||||| ||||| |||||    
T  21199518 tgttccacaaatc-gagtgttaactcgtaaacttgccaaagtttacgtttttaggtggcaaaaccgtgttaactc 21199591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 31725686 - 31725783
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattct 224  Q
    ||||||||||||| ||||||| ||||||| ||| || | |||||||| || ||||||||||| | || | || ||||| ||||| | ||||||||||||    
T  31725686 agtgtatgtttggattcacttatagagggaccagaaatgattatgga-gtctagaattgattataacctcttaggttgttgtcgagtagaattgattct 31725783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 33136677 - 33136600
Alignment:
Q  125 tagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||| ||||||||||||||| ||  | ||| |||||||| | ||||| || |||||||| |||||||||||||||    
T  33136677 tagtgtatatttggtttcacttttggaaag-ccaaaattaattctagaggtgtataattgattttgacatgtttggttg 33136600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 31975751 - 31975686
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||| || |||||||| ||||||||||| ||||| || ||||||||  ||||| |||||||||    
T  31975751 gagtttatgtgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttcttgtaaaatcg 31975686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 3481943 - 3481995
Alignment:
Q  139 tttcacttttagaggggccataattaattatggaggtatagaattgattctga 191  Q
    ||||||||||||||||  ||||||| |||||| | || |||||||||||||||    
T  3481943 tttcacttttagagggatcataattgattatgtatgtgtagaattgattctga 3481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 7280357 - 7280405
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggt 175  Q
    |||| |||||| || |||||||||||||| ||||||| |||||||||||    
T  7280357 gtgtgtgtttgattccacttttagaggggtcataattgattatggaggt 7280405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 34910896 - 34910964
Alignment:
Q  128 tgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgt 196  Q
    ||||| ||||||||||||| ||||||||||| |||  ||| | ||||| |||||||||| || ||||||    
T  34910896 tgtatttttggtttcacttctagaggggccaaaatcgattctagaggtgtagaattgatcctaacatgt 34910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 33047751 - 33047650
Alignment:
Q  121 tttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattga 220  Q
    |||||||| ||||||||||||| ||| ||||||| ||| |||| ||| ||||||| ||||||||||||| ||||||||| ||| || || | ||||||||    
T  33047751 tttttagtttatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattga 33047652  T
Q  221 tt 222  Q
    ||    
T  33047651 tt 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 38413591 - 38413506
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||| ||||| |||||||||  |||||||| | ||||||||||||||||||||  ||||| |||||||||||||| ||||||||    
T  38413591 tgttccataaatc-gagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaactc 38413506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 13833172 - 13833107
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||||||||||||||||||  |||||||||| ||||| || ||||||||| ||||||||||||||    
T  13833172 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcaatttctagtaaaatc 13833107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 40829634 - 40829705
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    ||||||| ||| |||||||||||||||||||||| |||||||| ||||||||  ||||| ||||||| ||||    
T  40829634 accgagtctacatttttaggtatcaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatagaaa 40829705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 30850244 - 30850346
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttga 395  Q
    ||||| || ||||||||||| | | | ||||||||||||||||  ||||||||| |||||||||| ||||| || |||| | ||||||||  ||||||||    
T  30850244 cgagtattgaaacgtaaactcgcctgcgtttacgtttttaggtgccaaaatcgtataaactcggaggtaaattcgttttttggtaaaatcataaagttga 30850343  T
Q  396 ccg 398  Q
    |||    
T  30850344 ccg 30850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 3716833 - 3716752
Alignment:
Q  122 ttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||| ||||||||||||||  ||||| |||||| || |||| ||| | ||||||||||||| |||||||||| ||||||||    
T  3716833 ttttaatgtatgtttggtttagctttttgaggggacaaaattgattttagaggtatagaattaattctgacatatttggttg 3716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 7629748 - 7629829
Alignment:
Q  121 tttttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    |||||||||||||||||||| ||||||| |||| ||||  ||| ||| | ||||| ||||||||||| || |||||||||||    
T  7629748 tttttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttggtt 7629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 13898442 - 13898525
Alignment:
Q  285 ttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||| ||||||||| ||||||||| | | |||||||||||||||||   ||||| ||||| |||||||| ||||||||    
T  13898442 ttccacaaatc-gagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactc 13898525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 14039059 - 14039142
Alignment:
Q  285 ttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||| ||||||||| ||||||||| | | |||||||||||||||||   ||||| ||||| |||||||| ||||||||    
T  14039059 ttccacaaatc-gagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactc 14039142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 25288610 - 25288678
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||| ||||||||||  |||||||||| ||||| || ||||||||  |||||||||||||||    
T  25288610 accgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcg 25288678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 215012 - 214945
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||| |||||||||||||||| ||||||||||| |||||  | ||||||||| ||||| ||||||||    
T  215012 accgaatttacgtttttaggtaccaaaatcgtgttaactctaaggtaaactcagtttctggtaaaatc 214945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 12877662 - 12877773
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttg 394  Q
    ||||||||||  |||||| | | ||||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| |  | |||||| |||| |||    
T  12877662 cgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttgatgaaatcggaaagtttg 12877761  T
Q  395 accgagttaaca 406  Q
    ||||||||||||    
T  12877762 accgagttaaca 12877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 18900031 - 18899956
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||||||||||||| ||||||    
T  18900031 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtt 18899956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 11153489 - 11153384
Alignment:
Q  281 aatgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagta 380  Q
    ||||||||||||||  |||||||||  |||||||| |  ||| |||||||||||||||    ||||||||| |||||||| ||||||||  ||||| |||    
T  11153489 aatgttccacaaatt-gagtgttaactcgtaaactcggacgaatttacgtttttaggtgctgaaatcgtgttaactcggaggtaaactcggtttctggta 11153391  T
Q  381 aaatcga 387  Q
    |||||||    
T  11153390 aaatcga 11153384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 15926378 - 15926444
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||| |||| ||||||||||| |||||||| || |||||  ||||| |||||||||    
T  15926378 cgagtttacgttttttggtaccaaaatcgtgtcaactcggaggttaactcgatttctggtaaaatcg 15926444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 32595887 - 32595969
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtc 208  Q
    ||||||| |||||||||| || ||||||| |||||||| ||||||| ||| || |||   |||||||||||||||||| ||||    
T  32595887 agtgtatatttggtttcaattctagagggaccataattgattatggtggtgtaaaatcatttctgacatgtttggttgttgtc 32595969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 3991773 - 3991846
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    |||||||||||||||||||  ||||| ||||| |||||||| ||||||||  ||| | || |||||||||||||    
T  3991773 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagtt 3991846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 8800859 - 8800814
Alignment:
Q  158 ataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  8800859 ataattgattttggaggtatagaattgattctgatatgtttggttg 8800814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 12036998 - 12037079
Alignment:
Q  172 aggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgattctattcgaaacta 253  Q
    |||| ||||| ||||||| ||||||||||||| ||||||| ||||||| || |||  | ||||||||||||| | |||||||    
T  12036998 aggtgtagaactgattctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaacta 12037079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 15224234 - 15224303
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||| |||||||| ||||||||||| ||||| || ||||||||  ||||| || |||||||||||||    
T  15224234 tttacgtgtttaggtaccaaaatcgtgttaactcagaggtaaactcgatttctggtgaaatcgaaaagtt 15224303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 30503100 - 30503217
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    |||||||| |||||| ||||| || ||||| || |||| ||| |||| || ||||||||||||| ||||||| | ||||| ||  |||||| ||||| ||    
T  30503100 agtgtatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattctaacatgttcgattgatttcaagaagaaatgattttg 30503199  T
Q  226 tcaccagaattgattcta 243  Q
     | ||| |||||||||||    
T  30503200 cctccaaaattgattcta 30503217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 15928594 - 15928532
Alignment:
Q  160 aattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgatt 222  Q
    |||| ||| ||||||| ||||||||||| ||||||||||||||| ||| | | ||||||||||    
T  15928594 aattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 2308811 - 2308742
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    |||||||||||| ||| ||||||||||| |||||||| ||||| ||  ||| | |||||||| |||||||    
T  2308811 tttacgtttttatgtaccaaaatcgtgttaactcggaggtaaattcggtttgtggtaaaatcaaaaagtt 2308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 33262853 - 33262902
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||||||||||||  ||||| |||||||||||| | ||||||||    
T  33262853 cgagtttacgtttttaggtggcaaaaacgtgtaaactcgaaggtaaactc 33262902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 42775031 - 42774958
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtt 197  Q
    ||||||||||| |||||| |||| ||| |  |||| |||| ||| | ||||||||||||||||| |||||||||    
T  42775031 ttagtgtatgtgtggtttaacttctagggtagccaaaattgattctagaggtatagaattgattttgacatgtt 42774958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 1833807 - 1833743
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||||||||||| ||||||||||| || | ||| ||||| ||  ||||| |||||||    
T  1833807 cgagtttacgtttttaggtaacaaaatcgtgtcaatttggaggtaaattcgatttctggtaaaat 1833743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 10657877 - 10657925
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||||||||  |||||||||| ||||| || |||||    
T  10657877 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaa 10657925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 33136063 - 33136131
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||| |||||||||||  |||||||||| ||||| || ||||||||  ||||| ||| |||||    
T  33136063 accgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtataatcg 33136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 13384829 - 13384729
Alignment:
Q  145 ttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgattctat 244  Q
    |||||||| | |||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| |  |||||  |||| || ||| ||||||||||||    
T  13384829 ttttagagtgaccataattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctat 13384730  T
Q  245 t 245  Q
    |    
T  13384729 t 13384729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 24067105 - 24067172
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||| ||||||||||| |||||||| || |||||| ||||| |||||||||    
T  24067105 ccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtgaactcaatttctggtaaaatcg 24067172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 41393958 - 41394025
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||| |||||  |||||||||||    
T  41393958 agtttacgtttttaggtatcaaaatcgtgttaattcggaggtaaactcagtttctgataaaatcgaaa 41394025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 10367890 - 10367955
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattct 189  Q
    |||||||||||||||||  |||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  10367890 ttagtgtatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 26668443 - 26668560
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctg 225  Q
    ||||||| || ||||  |||| |||||||||| | ||||||| ||||| | ||||||||||||| ||||||||| ||  ||||| | |||||||||||||    
T  26668443 agtgtattttcggttcaacttctagaggggccgttattaattctggagatgtagaattgattctaacatgtttgattcttgtcgagtagaattgattctg 26668542  T
Q  226 tcaccagaattgattcta 243  Q
     | ||| |||||||||||    
T  26668543 cctccataattgattcta 26668560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 32497988 - 32498056
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  |||||||||||||||    
T  32497988 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcg 32498056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 32100965 - 32101045
Alignment:
Q  127 gtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgt 207  Q
    |||||||||||||| ||||||||||||| | | | || ||| || | || |||||||||||||||||||||||||| ||||    
T  32100965 gtgtatgtttggttccacttttagagggactagagttgattctgaatgtgtagaattgattctgacatgtttggttaatgt 32101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 32994416 - 32994320
Alignment:
Q  128 tgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattct 224  Q
    ||||||||||||| ||||| ||||| ||   ||||| ||| |||| || ||||||||||| ||| ||||||||||| | ||||| ||||||||||||    
T  32994416 tgtatgtttggttccacttctagagaggttgtaattgattctggatgtgtagaattgattatgatatgtttggttgctttcgtgtagaattgattct 32994320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 369
Target Start/End: Complemental strand, 1528042 - 1527956
Alignment:
Q  282 atgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||||||| |||||||||| |||||| ||| || | |||||||||||| ||  ||||| ||||| |||||||| ||||||||    
T  1528042 atgttccacaaatc-gagtgttaaatcgtaaatttgtccaattttacgtttttaagtggcaaaaacgtgttaactcggaggtaaactc 1527956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 7533690 - 7533765
Alignment:
Q  124 ttagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||| ||||||||||| ||||||| ||||||||| |||||||| ||||||| ||||||     ||||||||||||||||    
T  7533690 ttagtatatgtttggttccacttttggaggggccaaaattaattctggaggtgtagaatc----ctgacatgtttggttg 7533765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 28317208 - 28317099
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    ||||| ||||||| |||||||||  |||||||| | |||| |||||||||||||||  |||||  ||| ||||||||| ||||||||  ||| | || ||    
T  28317208 tgttctacaaatc-gagtgttaattcgtaaactcgtccgaatttacgtttttaggtggcaaaaaggtgaaaactcggaggtaaactcgatttttggtgaa 28317110  T
Q  383 atcgaaaagtt 393  Q
    |||||||||||    
T  28317109 atcgaaaagtt 28317099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 37684339 - 37684413
Alignment:
Q  169 tggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgattcta 243  Q
    ||||||| || ||||||||| || ||||||||||| ||| | | |||||||||| |||| |||||||||||||||    
T  37684339 tggaggtgtaaaattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattcta 37684413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 6388222 - 6388153
Alignment:
Q  324 tttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    |||| ||||||||||| ||||||||||| |||||||| ||||||||  ||| | ||||||||| ||||||    
T  6388222 tttatgtttttaggtaccaaaatcgtgttaactcggaggtaaactctgtttatggtaaaatcggaaagtt 6388153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 37131387 - 37131338
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||| |||||||||| ||||||||||| |||||||| ||||||||    
T  37131387 cgagtttacatttttaggtaccaaaatcgtgtcaactcggaggtaaactc 37131338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 10295093 - 10295025
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||||  | |||||||| ||||| || ||||||||  ||||| |||||||||    
T  10295093 accgagtttacgtttttaggtacaacaatcgtgttaactctgaggtaaactcggtttctggtaaaatcg 10295025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 27878729 - 27878669
Alignment:
Q  326 tacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||| |||||||| ||||||||||| |||||||||||||| ||  ||||| |||||||||    
T  27878729 tacgtgtttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcg 27878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 28018910 - 28018850
Alignment:
Q  326 tacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||| |||||||| ||||||||||| |||||||||||||| ||  ||||| |||||||||    
T  28018910 tacgtgtttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcg 28018850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 15677990 - 15677915
Alignment:
Q  128 tgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    ||||||||||||| ||||| || |||||  | |||| ||| ||||| | || ||||||||||||||||||||||||    
T  15677990 tgtatgtttggttccacttctacaggggttaaaattgattgtggagttgtacaattgattctgacatgtttggttg 15677915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 35525362 - 35525417
Alignment:
Q  185 attctgacatgtttggttgatgtcgtgaagaattgattctgtcaccagaattgatt 240  Q
    ||||||||||||||| ||| ||||| | ||||||||||||  ||||||||||||||    
T  35525362 attctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgatt 35525417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 43166430 - 43166359
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||| | | ||||| ||||||| ||||    
T  43166430 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaataagtttctggtaaaattgaaa 43166359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 8029941 - 8029875
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||| |||||||| ||||||||||| ||||| ||  |||||||  ||||| |||||||||    
T  8029941 cgagtttacgtgtttaggtaccaaaatcgtgttaactctgagataaactcgatttctggtaaaatcg 8029875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 9288248 - 9288182
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||| ||  ||||| |||||||    
T  9288248 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 9288182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 42305358 - 42305292
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||| ||||||||||| |||||||||| ||||| || ||||| ||  ||||| |||||||    
T  42305358 accgagtttacctttttaggtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 42305292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 12522520 - 12522483
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcgg 359  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  12522520 agtttacgtttttaggtaccaaaatcgtgttaactcgg 12522483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 39648340 - 39648263
Alignment:
Q  125 tagtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    |||| ||||||||||| |||||||||||| | || |||| ||| | ||| | || |||||||| ||||||||||||||    
T  39648340 tagtatatgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttggtt 39648263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 44141247 - 44141186
Alignment:
Q  130 tatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctga 191  Q
    ||||||||||| ||||| ||||||  ||| |||| ||| ||||||| |||||||||||||||    
T  44141247 tatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctga 44141186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 12522598 - 12522542
Alignment:
Q  330 tttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||| ||||||||||| ||||| || ||||||||  ||||| |||||||||    
T  12522598 tttttaggtaccaaaatcgtgttaactcagaggtaaactcggtttctggtaaaatcg 12522542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 17234716 - 17234780
Alignment:
Q  322 agtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||| |||||||||||| ||||||| | | |||||||| ||||||||  ||||| |||||||||    
T  17234716 agtttgcgtttttaggtaccaaaatcctatcaactcggaggtaaactcgatttctggtaaaatcg 17234780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 31625755 - 31625823
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||| ||||||||||  ||||| |||| ||||| || ||||||||  ||||| |||||||||    
T  31625755 accgagtttacatttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaatcg 31625823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 43308260 - 43308196
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||| |||||||||||| ||||||||||| ||||| ||| |||| ||  ||||| |||||||    
T  43308260 cgagtttgcgtttttaggtaccaaaatcgtgttaactctgatataaaatcggtttctggtaaaat 43308196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 27148805 - 27148900
Alignment:
Q  279 gcaatgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttc 375  Q
    ||||||||||||||||| |||||||||  || ||| || | |||||||||||||||||||||||||||||||| || ||||| |||| |||| ||||    
T  27148805 gcaatgttccacaaatc-gagtgttaactcgcaaagtttatcgagtttacgtttttaggtatcaaaatcgtgttaaatcggaggtaacctcaatttc 27148900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 48136988 - 48136922
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||||||||||||| ||||||||||| ||||| || ||||||||| ||||| |||||||    
T  48136988 accgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcagtttctggtaaaat 48136922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 43172152 - 43172221
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcga 387  Q
    ||||||||||| |||||||||||||||||| ||| |||||||| ||||||||  ||||| ||||||||||    
T  43172152 accgagtttacatttttaggtatcaaaatcatgttaactcggaggtaaactcgatttctggtaaaatcga 43172221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 37972637 - 37972569
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||  |||||||| ||||| |||||||||    
T  37972637 accgagtttacgtttttaggtaccaaaatcgtgttaactctgagataaactcagtttctggtaaaatcg 37972569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 35313521 - 35313603
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||| |  ||||| ||||| |||||||| |||||    
T  35313521 tgttccacaaatc-gagtgttaacacgtaaactcgcccgagtttacgtttttagatggcaaaaccgtgttaactcggaggtaaa 35313603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 14732431 - 14732347
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaact 368  Q
    ||||||||||||| ||||||||| ||||||||| |  | |||||||||||||||||  ||||| ||||| |||||||| |||||||    
T  14732431 tgttccacaaatc-gagtgttaacacgtaaactcgctcaagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaact 14732347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 26201892 - 26201840
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactca 370  Q
    ||||| ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  26201892 accgaatttacatttttaggtaccaaaatcgtgtaaactcggaggtaaactca 26201840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 41827776 - 41827840
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    |||||||||||||||||||  |||||||||| ||||| || ||||||||| ||||| ||||||||    
T  41827776 gagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatc 41827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 45004876 - 45004952
Alignment:
Q  126 agtgtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggtt 202  Q
    ||||||| ||||||||||||| || | |||||| |||| ||| | ||||| ||||||||||| ||||||||||||||    
T  45004876 agtgtatatttggtttcacttctaaaagggccaaaattgattctagaggtgtagaattgattttgacatgtttggtt 45004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 12740815 - 12740866
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||||||||||||||||||||| ||||||||||| ||||| || ||||||||    
T  12740815 accgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactc 12740866  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 14741424 - 14741499
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||||||||||||| ||||||    
T  14741424 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtt 14741499  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 17111782 - 17111864
Alignment:
Q  142 cacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttgatgtcgtgaagaattgattct 224  Q
    ||||| |||||||| || |||||||| | ||| | | ||||||||||||||||||||||||| | ||| | ||||||||||||    
T  17111782 cacttctagaggggtcaaaattaattctagagatgtcgaattgattctgacatgtttggttgctttcgagtagaattgattct 17111864  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 11735289 - 11735224
Alignment:
Q  321 gagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||| ||||||||  ||||||||||| |||||||| ||||||||  ||||| |||||||||    
T  11735289 gagtttacgattttaggtcccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcg 11735224  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 32884216 - 32884305
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttgaccgagttaaca 406  Q
    ||||||||||||||||||||||  ||||||| || ||||| || ||||||||  ||||| ||||||||| || | ||||| |||||||||    
T  32884216 accgagtttacgtttttaggtacaaaaatcgagttaactctgaggtaaactctgtttctggtaaaatcggaaggtttgactgagttaaca 32884305  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 33497193 - 33497144
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||| |||||| ||||||||||||||| |||||||| ||||||||    
T  33497193 cgagtttacatttttaagtatcaaaatcgtgtcaactcggaggtaaactc 33497144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 16709433 - 16709485
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactca 370  Q
    |||||||||||||||||||||| ||||||||||  ||||| || |||||||||    
T  16709433 accgagtttacgtttttaggtaccaaaatcgtggtaactctgaggtaaactca 16709485  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 17683669 - 17683721
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactca 370  Q
    |||||||||||||||||||||| ||||||||||  ||||| || |||||||||    
T  17683669 accgagtttacgtttttaggtaccaaaatcgtggtaactctgaggtaaactca 17683721  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 29893417 - 29893501
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagttgaccgagtt 402  Q
    ||||||||||| |||||| |||  |||||||||| ||||| || ||||||||| ||||| || ||||||||| ||| | ||||||    
T  29893417 accgagtttacatttttaagtacaaaaatcgtgttaactctgaggtaaactcagtttctggtgaaatcgaaaggtttaacgagtt 29893501  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 369
Target Start/End: Original strand, 21024025 - 21024115
Alignment:
Q  278 tgcaatgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||| |||||||| ||||||||| ||||||| | | ||||||||||| ||||||||  ||||| ||||| |||||| | ||||||||    
T  21024025 tgcactgtttcacaaatc-gagtgttaacacgtaaattcgcccgagtttacgattttaggtgacaaaaacgtgttaactcgaaggtaaactc 21024115  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 42043349 - 42043409
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcgga 360  Q
    ||||||||||||| ||||||    ||||||||  |||||||||| ||||||||||||||||||||    
T  42043349 cgagtgttaaaacataaact----cgagtttaaatttttaggtagcaaaatcgtgtaaactcgga 42043409  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 28034608 - 28034542
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    |||||||||||||||||| |||  |||||||||| ||||| |||||||| ||  ||||| |||||||    
T  28034608 accgagtttacgtttttatgtacaaaaatcgtgttaactctgatgtaaaatcggtttctggtaaaat 28034542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 37328354 - 37328420
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||||||  |||||||||| |||||  | ||||||||  ||||| |||||||||    
T  37328354 cgagtttacgtttttaggtacaaaaatcgtgttaactctaaggtaaactcgatttctggtaaaatcg 37328420  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 40491472 - 40491546
Alignment:
Q  129 gtatgtttggtttcacttttagaggggccataattaattatggaggtatagaattgattctgacatgtttggttg 203  Q
    |||||||||||| ||||| |||||| | ||||||| | ||||| | | ||||||||||||| ||||| |||||||    
T  40491472 gtatgtttggttccacttctagaggtgtcataattgaatatggggttgtagaattgattctaacatggttggttg 40491546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 44256513 - 44256447
Alignment:
Q  320 cgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||||||| ||  |||||||||| ||||| || ||||||||  ||||| |||||||||    
T  44256513 cgagtttacgtttttagatacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcg 44256447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 8675776 - 8675841
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaa 383  Q
    |||||||| ||||||||||||| ||||||||||| |||||  | ||||||||  ||||| ||||||    
T  8675776 accgagttaacgtttttaggtaccaaaatcgtgttaactctaaggtaaactcggtttctggtaaaa 8675841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 4639976 - 4639908
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcg 386  Q
    ||||||||||||| |||||||   |||| ||||| |||||||| ||||||||  ||||| |||||||||    
T  4639976 accgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactctatttctggtaaaatcg 4639908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 29585959 - 29586007
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||||||||  |||||||||| ||||| || |||||    
T  29585959 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaa 29586007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 33383119 - 33383151
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtg 350  Q
    |||||||||||||||||||||| ||||||||||    
T  33383119 accgagtttacgtttttaggtaccaaaatcgtg 33383151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 37392748 - 37392684
Alignment:
Q  296 cgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcgga 360  Q
    ||||||||||  |||||| | | ||||||||||||||||||||  ||||| | ||||||||||||    
T  37392748 cgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacatgtaaactcgga 37392684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 39028532 - 39028580
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaa 366  Q
    ||||||||||||||||||||||  ||||| |||||||||| || |||||    
T  39028532 accgagtttacgtttttaggtacaaaaattgtgtaaactctgaggtaaa 39028580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 1007 - 932
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaagtt 393  Q
    ||||||||||||| |||||||| ||||||||||| |||||||| ||||||||  ||||| ||||||||| ||||||    
T  1007 accgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatcggaaagtt 932  T

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Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 57819 - 57752
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatc 385  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||||||  ||||||||||||||    
T  57819 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatc 57752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 393
Target Start/End: Original strand, 1331 - 1440
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaa 382  Q
    |||| |||||||| |||||||||  |||||||| ||||||||||||||||||||||  ||||| | ||| |||| ||| ||||||||  ||| |||| ||    
T  1331 tgtttcacaaatc-gagtgttaactcgtaaactcgaccgagtttacgtttttaggtggcaaaaacatgttaacttggaggtaaactcggtttttagtgaa 1429  T
Q  383 atcgaaaagtt 393  Q
    |||| ||||||    
T  1430 atcggaaagtt 1440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 25736 - 25652
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    ||||||||||||| |||||||||  ||||||||   | ||||||||||||||||||  ||||| ||||| |||||||| ||||||||    
T  25736 tgttccacaaatc-gagtgttaactcgtaaactct-ctgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactc 25652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 39390 - 39319
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaa 389  Q
    |||||||||||||||||||||| ||||||||||| ||| | || || |||||  ||||| ||||||||||||    
T  39390 accgagtttacgtttttaggtaccaaaatcgtgttaaccctgaggtcaactcggtttctggtaaaatcgaaa 39319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 354 - 439
Alignment:
Q  283 tgttccacaaatccgagtgttaaaacgtaaacttgaccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactc 369  Q
    |||| |||||||| ||||||||| ||||||||| |  |||||||||||||||| ||  ||||| ||||| |||||||| ||||||||    
T  354 tgtttcacaaatc-gagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactc 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 8855 - 8943
Alignment:
Q  319 ccgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaatcgaaaag-ttgaccgagttaaca 406  Q
    |||||||||| | |||||||| ||||||||||| ||||| || ||||||||  ||||| ||||||||| || | ||| |||||||||||    
T  8855 ccgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttggccgagttaaca 8943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 1313 - 1379
Alignment:
Q  318 accgagtttacgtttttaggtatcaaaatcgtgtaaactcggatgtaaactcattttctagtaaaat 384  Q
    ||||||||||||||||||||||  |||||||||| ||||| || ||||| ||  ||||| |||||||    
T  1313 accgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttcttgtaaaat 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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