View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_13 (Length: 535)
Name: NF20775_high_13
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 4 - 519
Target Start/End: Original strand, 104150 - 104665
Alignment:
| Q |
4 |
aatattaatcaatttatgtcaaagttcagtaaatataagataagagcttaactaatttgcttacagaaactgaagatggtgaaggttccctagttgagga |
103 |
Q |
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| T |
104150 |
aatattaatcaatttatgtcaaagttcagtaaatataagataagagcttaactaatttgcttacagaaactgaagatggtgaaggttccctagttgagga |
104249 |
T |
|
| Q |
104 |
accaaatgaccagaaagttttgcatgtccaaggtctctacaatgcatagatgaggaaccaaattaattaacagtgttgaggtgagtaataattggtaagg |
203 |
Q |
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| T |
104250 |
accaaatgaccagaaagttttgcatgtccaaggtctctacaatgcatagatgaggaaccaaattaattaacagtgttgaggtgagtaataattggtaagg |
104349 |
T |
|
| Q |
204 |
ttgaagaaaagaagagaaagtaaaagatagttacagtctagtaacgtggttatcacgatcacaggtaacatgaaaccatgtacaaggatccaccaaagtg |
303 |
Q |
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| T |
104350 |
ttgaagaaaagaagagaaagtaaaagatagttacagtctagtaacgtggttatcacgatcacaggtaacatgaaaccatgtacaaggatccaccaaagtg |
104449 |
T |
|
| Q |
304 |
gggtcccaactctgtagaatgttatttgggtcttttacagctcttctgaatgcatacaaggcatcacctgttagttttcatcagacagacagacagaaca |
403 |
Q |
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| T |
104450 |
gggtcccaactctgtagaatgttatttgggtcttttacagctcttctgaatgcatacaaggcatcacctgttagttttcatcagacagacagacagaaca |
104549 |
T |
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| Q |
404 |
tcaaaacaaaagattctttctttcagattatgtgtatgcttgtttgtatgtatcaatcaaaacaaaagagactgtactttacttaccttcagagtttgca |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104550 |
tcaaaacaaaagattctttctttcagattatgtgtatgcttgtttgtatgtatcaatcaaaacaaaagagactgtactttacttaccttcagagtttgca |
104649 |
T |
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| Q |
504 |
tttgctatatcgaaag |
519 |
Q |
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| T |
104650 |
tttgctatatcaaaag |
104665 |
T |
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