View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_20 (Length: 445)
Name: NF20775_high_20
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 35457623 - 35457219
Alignment:
| Q |
11 |
cagagagaataaaatcttttaacatttcatcaagcattaacataaacactcaaaataaacagcattcacggtaaagcaaagtaacaacctgacaaataat |
110 |
Q |
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| T |
35457623 |
cagagagaataaaatcttttaacatttcatcaagcattaacataaacactcaaaataaacagcattcacggtaaagcaaagtaacaacctgaaaaataat |
35457524 |
T |
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| Q |
111 |
atgattgcttctgcaaaaaattatctctgcaagggttgcatgccaaccaatttgggaatccagtagttgaaaaatcacagcaaaatgtatgaaaacgatt |
210 |
Q |
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| T |
35457523 |
atgattgcttctgcaaaaaattatctctgcaagggttgcatgccaaccaatttgggaatccagtagttgaaaaatcacagcaaaatggatgaaaacgaat |
35457424 |
T |
|
| Q |
211 |
gttaaaggagtcaactgcattggaattttcatcgataatttccttagctttcgcaagagtctcatcactacaatcacatgcataaacaacaatatccttg |
310 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35457423 |
gttaaaggagtcaactgcattggaattttcattgataatttccttagctttcgcaagagtctcatcactacaatcgcatgcataaacaacaatatccttg |
35457324 |
T |
|
| Q |
311 |
ttggccctacagaagaaaaattgataagaataacaaaaactaatgaatagcttagagaagaaagaacaaactttgctaggcaagacaaatcttccagagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35457323 |
ttggccctacagaagaaaaattgataagaataacaaaaaccaatgaatagctaagagaagaaagaacaaactttgctaggcaagacaaatcttccagagc |
35457224 |
T |
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| Q |
411 |
ttata |
415 |
Q |
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||||| |
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| T |
35457223 |
ttata |
35457219 |
T |
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