View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_22 (Length: 420)
Name: NF20775_high_22
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 31616343 - 31615965
Alignment:
| Q |
1 |
aattaatatgattataaaagtaatatataattaggagcttgccttttgattaactttctttaaaagacggattaatgttggatcaaccaagcctctttga |
100 |
Q |
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| T |
31616343 |
aattaatatgattataaaagtaatatataattaggagcttgccttttgattaactttctttaaaagacggattaatgttggatcaaccaagcctctttga |
31616244 |
T |
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| Q |
101 |
tttctacgaaagtaagatgcaaggatctgacatggtttctctttatcagccttaaggaaattcatgaatgttctgattccatcttccattatcacaagaa |
200 |
Q |
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| T |
31616243 |
tttctacgaaagtaagatgcaaggatctgacatggtttctctttatcagccttaaggaaattcatgaatgttctgattccatcttccattatcacaagaa |
31616144 |
T |
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| Q |
201 |
atgaagctgatgatattttagtgttaaacccaatattctccttctgatcatcatctgattctttaattaattaaattaacacaaacaagaaaataaataa |
300 |
Q |
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| T |
31616143 |
atgaagctgatgatattttagtgttaaacccaatattctccttctgatcatcatctgattctttaattaa-----ttaacacaaacaagaaaataaataa |
31616049 |
T |
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| Q |
301 |
atatagtcaaattaatatca-cagcaagtaaattttgtatgaatacaatattatttataaactaaacattatgaataaaaaagt |
383 |
Q |
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| T |
31616048 |
atatagtcaaattaaggtcagcagggagtaaattttgtatgaatacaatattatttataaactaaacattatgaattaaaaagt |
31615965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 43909895 - 43909721
Alignment:
| Q |
42 |
ccttttgattaactttctttaaaagacggattaatgttggatcaaccaagcctctttgatttctacgaaagtaagatgcaaggatctgacatggtttctc |
141 |
Q |
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||||||||||||||||||| | || || || |||||||||||||| |||||||| ||||| | ||||||| ||| ||||||||||||| ||| || |
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| T |
43909895 |
ccttttgattaactttcttcattagcttgagtagtgttggatcaaccatgcctcttttgtttctcctaaagtaatatgttaggatctgacatgatttttc |
43909796 |
T |
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| Q |
142 |
tttatcagccttaaggaaattcatgaatgttctgattccatcttccattatcacaagaaatgaagctgatgatat |
216 |
Q |
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|||||||| ||| || |||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||| |
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| T |
43909795 |
tttatcagtctttagaaaattcatgaatgttctgatcccaccttccattatcttaaggaatgaagctgaggatat |
43909721 |
T |
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