View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_32 (Length: 338)

Name: NF20775_high_32
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_32
NF20775_high_32
[»] chr2 (10 HSPs)
chr2 (15-320)||(3220458-3220763)
chr2 (180-317)||(12504891-12505032)
chr2 (180-317)||(14680894-14681035)
chr2 (180-299)||(39587523-39587646)
chr2 (16-78)||(12505163-12505225)
chr2 (16-78)||(14680701-14680763)
chr2 (16-78)||(39587777-39587839)
chr2 (72-125)||(12505091-12505144)
chr2 (72-125)||(14680782-14680835)
chr2 (72-125)||(39587705-39587758)
[»] chr1 (10 HSPs)
chr1 (176-317)||(52887877-52888022)
chr1 (180-317)||(52608987-52609128)
chr1 (181-317)||(29887123-29887263)
chr1 (16-77)||(52608794-52608855)
chr1 (16-78)||(52888149-52888210)
chr1 (72-125)||(52608875-52608928)
chr1 (72-125)||(52888077-52888130)
chr1 (210-314)||(13728701-13728805)
chr1 (38-78)||(29887395-29887435)
chr1 (72-116)||(29887332-29887376)
[»] scaffold0014 (6 HSPs)
scaffold0014 (180-317)||(173684-173825)
scaffold0014 (180-317)||(143890-144031)
scaffold0014 (16-78)||(144162-144224)
scaffold0014 (16-78)||(173956-174018)
scaffold0014 (72-125)||(173884-173937)
scaffold0014 (72-125)||(144090-144143)
[»] chr8 (8 HSPs)
chr8 (180-317)||(44198068-44198209)
chr8 (180-317)||(23928942-23929083)
chr8 (180-315)||(20793612-20793751)
chr8 (16-78)||(23928749-23928811)
chr8 (16-78)||(44198340-44198402)
chr8 (72-125)||(23928830-23928883)
chr8 (72-125)||(44198268-44198321)
chr8 (78-125)||(20793810-20793857)
[»] chr7 (15 HSPs)
chr7 (180-317)||(48513409-48513550)
chr7 (180-317)||(3718203-3718344)
chr7 (180-317)||(42105316-42105457)
chr7 (180-317)||(48727851-48727992)
chr7 (16-78)||(42105588-42105650)
chr7 (16-78)||(48513216-48513278)
chr7 (16-78)||(3718010-3718072)
chr7 (16-78)||(48727658-48727720)
chr7 (72-125)||(42105516-42105569)
chr7 (72-125)||(48513297-48513350)
chr7 (72-125)||(48727739-48727792)
chr7 (72-125)||(3718091-3718144)
chr7 (256-308)||(34529808-34529860)
chr7 (256-308)||(45574882-45574934)
chr7 (256-305)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (180-317)||(29651945-29652086)
chr6 (16-77)||(29652218-29652279)
chr6 (72-125)||(29652145-29652198)
[»] chr5 (12 HSPs)
chr5 (180-317)||(36678940-36679081)
chr5 (180-317)||(36662697-36662838)
chr5 (180-298)||(43560343-43560465)
chr5 (210-317)||(23203822-23203929)
chr5 (16-78)||(36662969-36663031)
chr5 (16-77)||(36678747-36678808)
chr5 (16-76)||(23198492-23198552)
chr5 (72-125)||(36662897-36662950)
chr5 (72-125)||(36678828-36678881)
chr5 (72-125)||(43560524-43560577)
chr5 (72-125)||(23198573-23198626)
chr5 (180-211)||(23198685-23198716)
[»] chr3 (10 HSPs)
chr3 (180-317)||(38327668-38327809)
chr3 (180-317)||(46073521-46073662)
chr3 (180-316)||(55488816-55488956)
chr3 (16-78)||(46073793-46073855)
chr3 (16-77)||(38327475-38327536)
chr3 (16-78)||(55489087-55489149)
chr3 (72-125)||(38327556-38327609)
chr3 (72-125)||(46073721-46073774)
chr3 (72-125)||(55489015-55489068)
chr3 (256-308)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (180-298)||(287-409)
scaffold1284 (72-125)||(468-521)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 3220763 - 3220458
Alignment:
Q  15 catagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagactctgaaattgcgcgaattcgagcaatgatttcagcga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220763 catagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagactctgaaattgcgcgaattcgagcaatgatttcagcga 3220664  T
Q  115 caatgcgtgaagacgcgttcgtgtgaagcactaactatgggaagagcaagattctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220663 caatgcgtgaagacgcgttcgtgtgaagcactaactatgggaagagcaagaatctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacg 3220564  T
Q  215 agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagc 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220563 agtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagc 3220464  T
Q  315 aggttt 320  Q
    ||||||    
T  3220463 aggttt 3220458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 12505032 - 12504891
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  12505032 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 12504933  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  12504932 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 12504891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 14680894 - 14681035
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14680894 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 14680993  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  14680994 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 14681035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 39587646 - 39587523
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaaccacg----agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    ||||||||||| |||| |||||||||||||||       ||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  39587646 tgaagcagtaattatggatctcatcccaaacctgccctaagtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 39587547  T
Q  276 gcagagcaaagaatcttgttcttc 299  Q
    ||||||||| ||||||||||||||    
T  39587546 gcagagcaatgaatcttgttcttc 39587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 12505225 - 12505163
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505225 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 12505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 14680701 - 14680763
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680701 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 14680763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 39587839 - 39587777
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39587839 atagggtcaaactcctcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 39587777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 12505144 - 12505091
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  12505144 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 12505091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 14680782 - 14680835
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  14680782 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 14680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 39587758 - 39587705
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  39587758 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 39587705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 52888022 - 52887877
Alignment:
Q  176 tgcatgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatcc 271  Q
    |||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52888022 tgcatgaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatcc 52887923  T
Q  272 aggtgcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  52887922 aggtgcagagcaatgaatcttgttcttcccattcagtgtaagcagg 52887877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 52608987 - 52609128
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  52608987 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 52609086  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  52609087 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 52609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 29887263 - 29887123
Alignment:
Q  181 gaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtg 276  Q
    ||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||    
T  29887263 gaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtg 29887164  T
Q  277 cagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29887163 cagagcaatgaatcttgttcttcccattcagtgtaagcagg 29887123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 52608794 - 52608855
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608794 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 52608855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 52888210 - 52888149
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52888210 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggt-cctgtgagagact 52888149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 52608875 - 52608928
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  52608875 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 52608928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 52888130 - 52888077
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  52888130 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 52888077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
Q  210 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 309  Q
    ||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| |||    
T  13728805 ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg 13728706  T
Q  310 taagc 314  Q
    |||||    
T  13728705 taagc 13728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 29887435 - 29887395
Alignment:
Q  38 gtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887435 gtgcttcaagaacaacttcaattaggtccctgtgagagact 29887395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 29887376 - 29887332
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgaca 116  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  29887376 agagactctgaaattgcgcgaattcgagcaatgaattcggcgaca 29887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 173825 - 173684
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  173825 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 173726  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  173725 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 173684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 144031 - 143890
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | |||||| ||||||||||||| |||||||| || |||||| | ||||||||||||||||||||    
T  144031 tgaagcagtaactatggatctcatcccaaacctgccaagagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggt 143932  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    || |||||| ||||||||||||||||||||||||||||||||    
T  143931 gctgagcaatgaatcttgttcttcccattcagtgtaagcagg 143890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 144224 - 144162
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144224 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 144162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 174018 - 173956
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  174018 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 173956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 173937 - 173884
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  173937 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 173884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 144143 - 144090
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  144143 agagactctgaaattgcgcgaattcgagcaatgaattcaacgacagtgcgtgaa 144090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 44198209 - 44198068
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  44198209 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 44198110  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  44198109 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 44198068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 23928942 - 23929083
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||    
T  23928942 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggt 23929041  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23929042 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 23929083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 20793751 - 20793612
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  20793751 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggt 20793652  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagca 315  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  20793651 gcagagcaatgaatcttgttcttcccattcagtgtaagca 20793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 23928749 - 23928811
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928749 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 23928811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 44198402 - 44198340
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198402 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 44198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 23928830 - 23928883
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  23928830 agagactctgaaattgtgcgaattcgagcaatgaattcagcgacagtgcgtgaa 23928883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 44198321 - 44198268
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  44198321 agagattctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 44198268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 20793857 - 20793810
Alignment:
Q  78 tctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  20793857 tctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 20793810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 48513409 - 48513550
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48513409 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48513508  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  48513509 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 48513550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 3718203 - 3718344
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    ||||||||||||| || |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  3718203 tgaagcagtaactgtggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggt 3718302  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  3718303 gcagagcaatgaatcttgttcttcccattcggtgtaagcagg 3718344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 42105457 - 42105316
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  42105457 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggt 42105358  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42105357 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 42105316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 48727851 - 48727992
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48727851 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48727950  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  48727951 gcagagcaatgaatcttgttcttcccatttagtgtaagcagg 48727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 42105650 - 42105588
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105650 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 42105588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 48513216 - 48513278
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513216 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 48513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3718010 - 3718072
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3718010 atagggtcaaactcttctggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 3718072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 48727658 - 48727720
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48727658 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggaccctgtgagagact 48727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 42105569 - 42105516
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  42105569 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 42105516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 48513297 - 48513350
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48513297 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 48513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 48727739 - 48727792
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  48727739 agagactctgaaattgcgcgaattcgagcaatgaattcaacgacagtgcgtgaa 48727792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 3718091 - 3718144
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  3718091 agagactctgaaattgcgtgaattcgagcaatgaattcaacgacagtgcgtgaa 3718144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
Q  256 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 308  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  34529808 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 34529860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
Q  256 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 308  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  45574882 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 45574934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
Q  256 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc 305  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||    
T  17990492 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc 17990443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 29652086 - 29651945
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  29652086 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 29651987  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29651986 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 29651945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 29652279 - 29652218
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652279 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 29652218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 29652198 - 29652145
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29652198 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 29652145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 36678940 - 36679081
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  36678940 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 36679039  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  36679040 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 36679081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 36662838 - 36662697
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||    
T  36662838 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggt 36662739  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  36662738 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 36662697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 43560465 - 43560343
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  43560465 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 43560366  T
Q  276 gcagagcaaagaatcttgttctt 298  Q
    ||||||||| |||||||||||||    
T  43560365 gcagagcaatgaatcttgttctt 43560343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 23203822 - 23203929
Alignment:
Q  210 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 309  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23203822 ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg 23203921  T
Q  310 taagcagg 317  Q
    ||| ||||    
T  23203922 taaacagg 23203929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 36663031 - 36662969
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36663031 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 36662969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 36678747 - 36678808
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678747 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 36678808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 23198492 - 23198552
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagaga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23198492 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctatgagaga 23198552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 36662950 - 36662897
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  36662950 agagattctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 36662897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 36678828 - 36678881
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  36678828 agagactctgaaattgcgcgaattcgagcaatgaattcagagacagtgcgtgaa 36678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 43560577 - 43560524
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  43560577 agagactctgaaattgcgagaattcgagcaatgaattcagcgacagtgcgtgaa 43560524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 23198573 - 23198626
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||| || |||||||||||||| |||||||||| ||||||||    
T  23198573 agagactctgaaattgtgcaaattcgagcaatgaattcagcgacagtgcgtgaa 23198626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 23198685 - 23198716
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc 211  Q
    ||||||||||||||||||||||||||||||||    
T  23198685 tgaagcagtaactatgaatctcatcccaaacc 23198716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 317
Target Start/End: Original strand, 38327668 - 38327809
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  38327668 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 38327767  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  38327768 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 38327809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 46073662 - 46073521
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaa----ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    |||||||||||||||| |||||||||||||    ||| ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  46073662 tgaagcagtaactatggatctcatcccaaatctgccatgagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 46073563  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcagg 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  46073562 gcagagcaatgaatcttgttcttcccattcagtgtaagcagg 46073521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 316
Target Start/End: Complemental strand, 55488956 - 55488816
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaa----accacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    ||||||||||||| || ||||||||||||     |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  55488956 tgaagcagtaactgtggatctcatcccaagcctgccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggt 55488857  T
Q  276 gcagagcaaagaatcttgttcttcccattcagtgtaagcag 316  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  55488856 gcagagcaatgaatcttgttcttcccattcagtgtaagcag 55488816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 46073855 - 46073793
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073855 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 46073793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 38327475 - 38327536
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327475 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagac 38327536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 55489149 - 55489087
Alignment:
Q  16 atagggtcaaactcttcaggaagtgcttcaagaacaacttcaattaggtccctgtgagagact 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55489149 atagggtcaaactcttcaagaagtgcttcaagaacaacttcaattaggtccctgtgagagact 55489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 38327556 - 38327609
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  38327556 agagactctgaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 38327609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 46073774 - 46073721
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  46073774 agagactctgaatttgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 46073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 55489068 - 55489015
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  55489068 agagactcagaaattgcgcgaattcgagcaatgaattcagcgacagtgcgtgaa 55489015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
Q  256 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 308  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  35029014 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 35029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 409 - 287
Alignment:
Q  180 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 275  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  409 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 310  T
Q  276 gcagagcaaagaatcttgttctt 298  Q
    ||||||||| |||||||||||||    
T  309 gcagagcaatgaatcttgttctt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 521 - 468
Alignment:
Q  72 agagactctgaaattgcgcgaattcgagcaatgatttcagcgacaatgcgtgaa 125  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  521 agagactctgaaattgcgagaattcgagcaatgaattcagcgacagtgcgtgaa 468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University