View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_34 (Length: 330)
Name: NF20775_high_34
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 27 - 322
Target Start/End: Original strand, 11483309 - 11483606
Alignment:
| Q |
27 |
tgaaagcagggatagggatcgtgggtaatgtgtcattgtccactcccgctatgcttgtgactcaatttttgagcacttaacgacccacatattgatttga |
126 |
Q |
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| T |
11483309 |
tgaaagcagggatagggatcgtgggtaatgtgtcattgtccactcccgctatgcttgtgactcaatttttgagcatttaacgaccaacatattgatttga |
11483408 |
T |
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| Q |
127 |
tggccttgaaagaatcatctccctcactcagtttttctagcatcacataccctatactatagagaggggcattcttgcatgat--cgtcatcacctattt |
224 |
Q |
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| T |
11483409 |
tggccttgaaagaatcatcttcctcactcagtttttctagcatcgcataccctatactatagagaggagcattcttgcatgattgcgtcatcacctattt |
11483508 |
T |
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| Q |
225 |
gtcgagttcggctaaaatgataattatttttaagtgtaaataacaccatatcaaatatatcagcctttagttttgaagttctactaaaagatattctt |
322 |
Q |
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| T |
11483509 |
atcgagttcggctaaaatgataattatttttaagtgtaaataacaccatatccaatatatcagcctttagttttgaagttatactaaaagatattctt |
11483606 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 17163093 - 17163056
Alignment:
| Q |
219 |
ctatttgtcgagttcggctaaaatgataattattttta |
256 |
Q |
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| T |
17163093 |
ctatttgccgagttcggctaacatgataattattttta |
17163056 |
T |
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