View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_37 (Length: 318)

Name: NF20775_high_37
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_37
NF20775_high_37
[»] chr3 (2 HSPs)
chr3 (1-299)||(1665761-1666062)
chr3 (97-146)||(25931848-25931897)
[»] chr4 (7 HSPs)
chr4 (78-136)||(2326730-2326788)
chr4 (57-146)||(26955296-26955385)
chr4 (97-141)||(3860272-3860316)
chr4 (97-141)||(3869029-3869073)
chr4 (17-140)||(14334366-14334490)
chr4 (97-141)||(25013417-25013461)
chr4 (97-141)||(51967248-51967292)
[»] chr1 (2 HSPs)
chr1 (6-52)||(2293369-2293415)
chr1 (50-146)||(8122176-8122272)
[»] chr6 (1 HSPs)
chr6 (97-146)||(15381597-15381646)
[»] scaffold0433 (1 HSPs)
scaffold0433 (97-141)||(361-405)
[»] chr2 (2 HSPs)
chr2 (97-141)||(13898447-13898491)
chr2 (97-141)||(14039064-14039108)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 1666062 - 1665761
Alignment:
Q  1 tatcgattttaaaccatgttaacttggtgaaactcgatcaactttctgatttaccgaaaaacgtgtttacgtttaaatttacacaattttagtacttaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||| ||||||||    
T  1666062 tatcgattttaaaccatgttaacttggtgaaattcgatcaactttctaatttaccaaaaaatgagtttacgtttaaatttacacaattttaatacttaaa 1665963  T
Q  101 aacgtaaagtcaaacgagtttacgtttaaacactcgatttgcaaaagtactctattattttccttgttataaaacaaaagtaatatttctct--nnnnnn 198  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  1665962 aacgtaaagtcaaacgagtttacgtttaaacacacgatttgcaaaagtactctattattttccttgttataaaacaaaagtaatatttctctaaaaaaaa 1665863  T
Q  199 nnnnngtaatatattgaccctaccacatagaattaggcatatgttatggtaagttaggcatatgacatggtatgtgaactatattgact-acattcccat 297  Q
         |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1665862 agaaagtaatatattgaccctaccacatagagttaggcatatgttatggtaagttaggcatatgacatggtatgtgaactatattgactcacattcccat 1665763  T
Q  298 cc 299  Q
    ||    
T  1665762 cc 1665761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 25931897 - 25931848
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttgcaaaa 146  Q
    ||||||| |||| |||||||| ||||||||| |||||||||||| |||||    
T  25931897 taaaaacataaactcaaacgaatttacgttttaacactcgatttacaaaa 25931848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 2326730 - 2326788
Alignment:
Q  78 tttacacaattttagtacttaaaaacgtaaagtcaaacgagtttacgtttaaacactcg 136  Q
    ||||||| ||||| |||| |||||||||||| |||  ||||||||||||| ||||||||    
T  2326730 tttacacgattttggtacctaaaaacgtaaattcaggcgagtttacgttttaacactcg 2326788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 26955385 - 26955296
Alignment:
Q  57 aaaaacgtgtttacgtttaaatttacacaattttagtacttaaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttgcaaaa 146  Q
    |||||||  ||||| ||| ||||||||| |||||   || |||||||||||| ||   | ||||||||||| ||||||||||||||||||    
T  26955385 aaaaacgaatttacctttgaatttacacgattttgaaacctaaaaacgtaaattcgggcaagtttacgttttaacactcgatttgcaaaa 26955296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 3860272 - 3860316
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  3860272 taaaaacgtaaactcgaacgagtttacgtgttaacactcgatttg 3860316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 3869029 - 3869073
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  3869029 taaaaacgtaaactcgaacgagtttacgtgttaacactcgatttg 3869073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 14334490 - 14334366
Alignment:
Q  17 tgttaacttggtgaaactcgatcaactttctgattt-accgaaaaacgtgtttacgtttaaatttacacaattttagtacttaaaaacgtaaagtcaaac 115  Q
    |||||||| ||| ||||| | ||||||||| ||||| ||| ||||||  ||||||||   | ||||| | ||||| |||| |||||||||||| ||   |    
T  14334490 tgttaactcggtcaaactaggtcaactttccgattttaccaaaaaacaagtttacgtccgagtttacgcgattttggtacctaaaaacgtaaactcgggc 14334391  T
Q  116 gagtttacgtttaaacactcgattt 140  Q
     ||||||||||| ||||||||||||    
T  14334390 aagtttacgttttaacactcgattt 14334366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 25013461 - 25013417
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  25013461 taaaaacgtaaactcgaacgagtttacgtgttaacactcgatttg 25013417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 51967292 - 51967248
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  51967292 taaaaacgtaaactcgaacgagtttacgtgttaacactcgatttg 51967248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2293369 - 2293415
Alignment:
Q  6 attttaaaccatgttaacttggtgaaactcgatcaactttctgattt 52  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  2293369 attttaagccatgttaacttggtcaaaatcggtcaactttctgattt 2293415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 8122272 - 8122176
Alignment:
Q  50 tttaccgaaaaacgtgtttacgtttaaatttacacaattttagtacttaaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttgcaaaa 146  Q
    |||||| ||||||| ||||| |||  | ||||||| ||||| ||| ||||||||||||| ||  || | |||| |||| |||||| |||||||||||    
T  8122272 tttaccaaaaaacgagtttaagttcgagtttacacgattttggtatttaaaaacgtaaactcggacaaatttatgttttaacacttgatttgcaaaa 8122176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 15381597 - 15381646
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttgcaaaa 146  Q
    |||||||||||| |  | ||||||||||||| ||||||||||||||||||    
T  15381597 taaaaacgtaaacttgatcgagtttacgttttaacactcgatttgcaaaa 15381646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 405 - 361
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  405 taaaaacgtaaactcgaacgagtttacgtgttaacactcgatttg 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 13898491 - 13898447
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| ||| |||||||||||| | |||||||||||||    
T  13898491 taaaaacgtaaactcagacgagtttacgtgttaacactcgatttg 13898447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 14039108 - 14039064
Alignment:
Q  97 taaaaacgtaaagtcaaacgagtttacgtttaaacactcgatttg 141  Q
    |||||||||||| ||| |||||||||||| | |||||||||||||    
T  14039108 taaaaacgtaaactcagacgagtttacgtgttaacactcgatttg 14039064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University