View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_49 (Length: 258)

Name: NF20775_high_49
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_49
NF20775_high_49
[»] chr1 (5 HSPs)
chr1 (19-210)||(1589390-1589581)
chr1 (52-112)||(19610807-19610867)
chr1 (50-116)||(35804335-35804400)
chr1 (50-116)||(48050942-48051008)
chr1 (54-106)||(13412081-13412133)
[»] chr3 (4 HSPs)
chr3 (40-140)||(30443743-30443843)
chr3 (40-143)||(43753749-43753852)
chr3 (67-107)||(29388286-29388326)
chr3 (61-141)||(32089348-32089428)
[»] chr7 (2 HSPs)
chr7 (54-116)||(24097990-24098052)
chr7 (61-140)||(30774136-30774216)
[»] chr6 (1 HSPs)
chr6 (39-106)||(21873107-21873174)
[»] chr8 (7 HSPs)
chr8 (39-113)||(27567522-27567596)
chr8 (52-140)||(21484951-21485038)
chr8 (66-141)||(29642829-29642904)
chr8 (67-116)||(3938326-3938375)
chr8 (64-141)||(24585973-24586050)
chr8 (67-116)||(31740327-31740376)
chr8 (50-115)||(33012906-33012971)
[»] chr4 (3 HSPs)
chr4 (54-140)||(47678825-47678911)
chr4 (55-140)||(10048533-10048618)
chr4 (67-114)||(17268068-17268115)
[»] chr2 (1 HSPs)
chr2 (54-141)||(41824098-41824185)
[»] chr5 (1 HSPs)
chr5 (50-140)||(4042664-4042754)
[»] scaffold0006 (1 HSPs)
scaffold0006 (54-107)||(278596-278651)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 1589581 - 1589390
Alignment:
Q  19 tatataatactccctcaacgttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtat 118  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |    
T  1589581 tatataatactccctcaatgttttttacaaaagacaaattgatcaactaaagttaatatatttagttcataatatagattaaatacattaacttttgttt 1589482  T
Q  119 actcatatgtttcttataaaaagaatccgaaggagtggtatggtcttgtcacataactttctcacttgtgaaatagtagctatgtaataata 210  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1589481 actcatatgtttcttataaaaaaaatccgaaggagtggtatggtcgtgtcacataactttctcacttgtgaaatagtagctatgtaataata 1589390  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 19610807 - 19610867
Alignment:
Q  52 acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaactt 112  Q
    |||||| | ||||| ||||||||||||||||||||||||||| || ||||||||| |||||    
T  19610807 acaaatgggtcaacaaaaattgatgtatttagttcataatatggactaaatacatcaactt 19610867  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 35804335 - 35804400
Alignment:
Q  50 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 116  Q
    |||||||||| |||| |||||||| |||||||  | ||||||||| |||||||||||||||||||||    
T  35804335 agacaaattggtcaattaaaattg-tgtatttgatccataatataaattaaatacattaacttttgt 35804400  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 48051008 - 48050942
Alignment:
Q  50 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 116  Q
    |||||||||| ||||||||| ||||||||||| ||||||||| | ||  ||||||||| ||||||||    
T  48051008 agacaaattggtcaactaaagttgatgtatttggttcataatgtggaccaaatacatttacttttgt 48050942  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 13412133 - 13412081
Alignment:
Q  54 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat 106  Q
    |||||| |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  13412133 aaattggtcaattaaaattgatgtatttggttcataatctagactaaatacat 13412081  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 30443843 - 30443743
Alignment:
Q  40 tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa 139  Q
    ||||||||  |||||||||| ||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||||  || ||| ||||||||||||||    
T  30443843 tttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccatttgtttcttataaaa 30443744  T
Q  140 a 140  Q
    |    
T  30443743 a 30443743  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 43753852 - 43753749
Alignment:
Q  40 tttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaa 139  Q
    |||||| | |||||| ||| |||||| ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||  |||||| ||||| |||||||     
T  43753852 tttttataaaagacagatttatcaaccaaagttgatgtatttggttcataatgtagatcaaatacattaacttttgttgactcatttgtttattataaat 43753753  T
Q  140 agaa 143  Q
    ||||    
T  43753752 agaa 43753749  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 29388286 - 29388326
Alignment:
Q  67 aaaattgatgtatttagttcataatatagattaaatacatt 107  Q
    ||||||||||||||||||| | ||||||| |||||||||||    
T  29388286 aaaattgatgtatttagtttaaaatatagtttaaatacatt 29388326  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 32089348 - 32089428
Alignment:
Q  61 tcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 141  Q
    |||||||||| | |||||||||  | ||||||| |||||| ||||||||||||| |  |  ||||||||| ||||||||||    
T  32089348 tcaactaaaactaatgtatttaacttataatatggattaagtacattaacttttattgatccatatgtttattataaaaag 32089428  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 24098052 - 24097990
Alignment:
Q  54 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgt 116  Q
    |||||| |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  24098052 aaattggtcaactaaaattgatgtatttgattcataatatagattaaatacattaaattttgt 24097990  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 30774216 - 30774136
Alignment:
Q  61 tcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtt-tcttataaaaa 140  Q
    ||||| |||||||||||||||| || || ||| ||||||||||||| |||||||||  |||||| | || |||||||||||    
T  30774216 tcaaccaaaattgatgtatttaatttattataaagattaaatacatcaacttttgttgactcatttattatcttataaaaa 30774136  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 21873174 - 21873107
Alignment:
Q  39 ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacat 106  Q
    ||||||| | || |||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||    
T  21873174 ttttttataaaaaacaaattgatcaactaaaattgatttatttaattcataacatagatcaaatacat 21873107  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 27567596 - 27567522
Alignment:
Q  39 ttttttacataagacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttt 113  Q
    ||||||| | |||| ||||||||| |||||||||||| ||||| ||||||||||||||  |||||||| ||||||    
T  27567596 ttttttataaaagataaattgatcgactaaaattgatatatttggttcataatatagaccaaatacatcaacttt 27567522  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 21485038 - 21484951
Alignment:
Q  52 acaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 140  Q
    |||||||| ||||| ||||||||||||||| ||||||||| |||| ||||||||| || |||| | | ||||| | |||||||||||||    
T  21485038 acaaattggtcaaccaaaattgatgtatttggttcataatgtagactaaatacatcaatttttttgt-ctcatttatttcttataaaaa 21484951  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 29642904 - 29642829
Alignment:
Q  66 taaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 141  Q
    |||||| ||||||||||||| |||||||||| |||||| ||||| ||||||  ||  || ||| ||||||||||||    
T  29642904 taaaatagatgtatttagttaataatatagactaaatatattaatttttgttgaccaatttgtctcttataaaaag 29642829  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 3938375 - 3938326
Alignment:
Q  67 aaaattgatgtatttagttcataatatagattaaatacattaacttttgt 116  Q
    ||||||||||||||| |||||||||| |||  |||||||| |||||||||    
T  3938375 aaaattgatgtatttggttcataataaagaccaaatacatcaacttttgt 3938326  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 24586050 - 24585973
Alignment:
Q  64 actaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 141  Q
    |||||| ||||||||||||||| || || ||||  ||||| || |||||||||  |||||| | ||||||||||||||    
T  24586050 actaaagttgatgtatttagtttatcatgtagaccaaataaatcaacttttgttgactcatttatttcttataaaaag 24585973  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 31740376 - 31740327
Alignment:
Q  67 aaaattgatgtatttagttcataatatagattaaatacattaacttttgt 116  Q
    |||||||||||||||  ||| ||||||||||||||||||| || ||||||    
T  31740376 aaaattgatgtatttcattcgtaatatagattaaatacatcaagttttgt 31740327  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 33012971 - 33012906
Alignment:
Q  50 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttg 115  Q
    |||||||| ||| ||||||| |||||||||||  ||||||| |||||  ||||| |||||||||||    
T  33012971 agacaaatggattaactaaagttgatgtatttgattcataacatagaccaaatatattaacttttg 33012906  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 47678825 - 47678911
Alignment:
Q  54 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 140  Q
    |||||| |||||||||||||||||||||  || ||||| ||||| ||||||||||  ||||||  |||||| | |||||||||||||    
T  47678825 aaattggtcaactaaaattgatgtatttgatttataatgtagatcaaatacattagtttttgttgactcatttatttcttataaaaa 47678911  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 10048533 - 10048618
Alignment:
Q  55 aattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 140  Q
    ||||| |||||||||||| |||||||| |||||  |||||||  |||||||| |||||||||  | |||| |||||||||||||||    
T  10048533 aattggtcaactaaaattaatgtatttggttcaggatatagaccaaatacatcaacttttgttgattcatttgtttcttataaaaa 10048618  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 17268115 - 17268068
Alignment:
Q  67 aaaattgatgtatttagttcataatatagattaaatacattaactttt 114  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  17268115 aaaattgatgtatgtggttcataatatagatcaaatacattaactttt 17268068  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 41824185 - 41824098
Alignment:
Q  54 aaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaag 141  Q
    |||||| |||||||||||||||||||||||||||||||   ||| ||||| ||||| ||||||  |||| |  || ||||||||||||    
T  41824185 aaattggtcaactaaaattgatgtatttagttcataatgatgatcaaatatattaatttttgttaactcgttcgtgtcttataaaaag 41824098  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 4042754 - 4042664
Alignment:
Q  50 agacaaattgatcaactaaaattgatgtatttagttcataatatagattaaatacattaacttttgtatactcatatgtttcttataaaaa 140  Q
    |||||||||||| ||||| | ||||||||||  ||| ||||||||||| |||| ||| ||||||| |  |||||| | |||||||||||||    
T  4042754 agacaaattgattaactagagttgatgtattcggtttataatatagatcaaatgcatcaacttttattgactcatttatttcttataaaaa 4042664  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 278651 - 278596
Alignment:
Q  54 aaattgatcaactaaaattgatgtatttagttcataat--atagattaaatacatt 107  Q
    |||||| |||| |||||||||||||||| |||||||||  ||||| ||||||||||    
T  278651 aaattggtcaattaaaattgatgtatttggttcataatagatagactaaatacatt 278596  T

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