View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_57 (Length: 249)
Name: NF20775_high_57
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 11483641 - 11483733
Alignment:
| Q |
5 |
ctttgtgacaagggcctctaaacaagttgctcccaagtcttttcttctagtaatttcttcattgaatatgacatcctttacttgagatgaagt |
97 |
Q |
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| T |
11483641 |
ctttgtgacaagggcctctgaacaagttgctcccaagtcttttcttctagtaatttcttcattgaatatgacatcctttacttgagatgaagt |
11483733 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 12931567 - 12931528
Alignment:
| Q |
132 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
171 |
Q |
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| T |
12931567 |
accaccaaagtctcccaactttttggcaaagaactcaaaa |
12931528 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 14174837 - 14174798
Alignment:
| Q |
132 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
171 |
Q |
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| T |
14174837 |
accaccaaagtctcccaactttctggcaaagaactcaaaa |
14174798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 28611040 - 28611079
Alignment:
| Q |
132 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
171 |
Q |
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| T |
28611040 |
accaccaaagtctcccaactttctggcaaagaactcaaaa |
28611079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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