View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_58 (Length: 249)
Name: NF20775_high_58
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 44680079 - 44680288
Alignment:
| Q |
24 |
aagagctgagatggggtctattctttttcgagaaggatttgttctctagtaggcaatgaaaaaacaaagctgagttgtctcttctttttagttgtatcgt |
123 |
Q |
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| T |
44680079 |
aagagctgagatgaggtctgttctttttcgagaaggatttgttctctagtaggcaatgaaaaaacaaagctgagttgtctattctttttagttgtatcat |
44680178 |
T |
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| Q |
124 |
aatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgttagtaaataactaagtatatatggtttactgttgttgctttcttat |
223 |
Q |
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| T |
44680179 |
aatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgttagtaaataactaagtatatatggtttactgttattgctttcttat |
44680278 |
T |
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| Q |
224 |
ctttagtagt |
233 |
Q |
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|||||||||| |
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| T |
44680279 |
ctttagtagt |
44680288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 44689290 - 44689421
Alignment:
| Q |
75 |
ggcaatgaaaaaacaaagctgagttgtctcttctttttagttgtatcgtaatttgaatgaaagggatcatgtgcattggtttattaaattgctcatacta |
174 |
Q |
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| T |
44689290 |
ggcaatgaaaaaacaaagctgagttgtctattctttttcgttgtatcataatttgaatgaaagggatcctctgcattggtttgttaaattgctcatacta |
44689389 |
T |
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| Q |
175 |
tgttagtaaataactaag-tatatatggttta |
205 |
Q |
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| T |
44689390 |
tgttagtaaataaccaagttatatatggttta |
44689421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 41979742 - 41979687
Alignment:
| Q |
125 |
atttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgttagt |
181 |
Q |
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| T |
41979742 |
atttgaatgaa-gggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 18990749 - 18990683
Alignment:
| Q |
116 |
tgtatcgtaatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgttagtaa |
183 |
Q |
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| T |
18990749 |
tgtatcataatttgaatgaa-gtgattgtgtgcattggtttattaaattgtttgtactatgttagtaa |
18990683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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