View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_59 (Length: 248)
Name: NF20775_high_59
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_59 |
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| [»] scaffold0026 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 100380 - 100143
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaat----tcaatcatgagtga---tactca |
110 |
Q |
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| T |
100380 |
atttgaatcttttaagaatgaaaacatttgtttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactactca |
100281 |
T |
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| Q |
111 |
attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgaaaaatggattaattactgaaatgaaatgcct |
210 |
Q |
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| T |
100280 |
attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgaaaaatggattaattactgaaatgaaatgcct |
100181 |
T |
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| Q |
211 |
tacttcttgaaaaacttgagactcaggtccccagaatt |
248 |
Q |
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| T |
100180 |
tacttcttgaaaaacttgagactcaggtccccagaatt |
100143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 102457 - 102389
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca |
86 |
Q |
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| T |
102457 |
atttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtca |
102389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 25849807 - 25850050
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaattcaat----catgagtgatact----- |
108 |
Q |
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| T |
25849807 |
atttgaatcttttaagaatgaaaacatttgcttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactatact |
25849906 |
T |
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| Q |
109 |
---caattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttga-aaaatggattaattactgaaatgaa |
204 |
Q |
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| T |
25849907 |
actcaattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgataaatttaattaattaaggaaatgaa |
25850006 |
T |
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| Q |
205 |
atgccttacttcttgaaaaacttgagactcaggtccccagaatt |
248 |
Q |
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| T |
25850007 |
atgtcttacttcgtgaaaaacttgagactcaggtcacaagaatt |
25850050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25847830 - 25847898
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca |
86 |
Q |
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| T |
25847830 |
atttgaatcttttaagaatgagaacaattgcttagctggtggagcaatctcaaggattctaacatgtca |
25847898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 25848018 - 25848059
Alignment:
| Q |
204 |
aatgccttacttcttgaaaaacttgagactcaggtccccaga |
245 |
Q |
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| T |
25848018 |
aatgacttacttcttgaaaaacttgagactcagatctccaga |
25848059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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