View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_6 (Length: 673)

Name: NF20775_high_6
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_6
NF20775_high_6
[»] chr4 (2 HSPs)
chr4 (69-667)||(1918260-1918856)
chr4 (611-657)||(1872243-1872289)
[»] chr7 (7 HSPs)
chr7 (71-442)||(17491812-17492182)
chr7 (71-442)||(17561032-17561402)
chr7 (441-667)||(17491306-17491516)
chr7 (441-667)||(17561698-17561908)
chr7 (18-71)||(17493663-17493716)
chr7 (18-71)||(17559498-17559551)
chr7 (18-71)||(2938961-2939014)
[»] chr3 (2 HSPs)
chr3 (18-72)||(50089112-50089166)
chr3 (20-56)||(29167957-29167993)
[»] chr2 (1 HSPs)
chr2 (18-66)||(26602524-26602572)
[»] chr8 (2 HSPs)
chr8 (22-59)||(28641486-28641523)
chr8 (23-59)||(28744704-28744740)
[»] scaffold0081 (1 HSPs)
scaffold0081 (19-59)||(10633-10673)
[»] chr5 (1 HSPs)
chr5 (18-59)||(8542348-8542390)


Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 69 - 667
Target Start/End: Complemental strand, 1918856 - 1918260
Alignment:
Q  69 tctttttataaataagatttgttaaggcaagttgaatgagga-----ctcactagtatcaagaaaataaattttgagaatccaagatcatttacaaatat 163  Q
    ||||||||||||||||||| ||||||||||||||||||| ||     |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  1918856 tctttttataaataagattagttaaggcaagttgaatgatgatgagactcactagtatcaaaaaaataaattttgagaatccaaaatcatttacaaatat 1918757  T
Q  164 aattatttattatccatatcaatgagattctcacgtggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatacgac 263  Q
    ||||||||||||||| |  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1918756 aattatttattatccgt--caataagattctcacttggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatacaac 1918659  T
Q  264 ccacaaataaaaattatttgagcacacatcaacaattcagaaaattaaaagcgaaataatttatctttaattattttcatttgtgtacattcaaataatt 363  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1918658 c-acaaataaaaattatttgagcacacatcaacaattcaggaaattaaaagcgaaataatttatctttaattatttccatttgtgtacattcaaataatt 1918560  T
Q  364 ttgatttgagattgtgcccaaaacttactctttttagcaagtggataatcttaacatataataatttgaaacaatattatatatgcacactcaatatgac 463  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1918559 ttgatttgagattgtggccaaaacttactctttttagcaagtggataatcttaacatataataatttgaaacaatattatatatacacactcaatatgac 1918460  T
Q  464 aatgacaaactcaagatgatgaagtgagttgctccatagtactcaatatattactcacctccactacctccctcaaccacccttctcttgnnnnnnnctt 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||       |||    
T  1918459 aatgacaaactcaagatgatgaagtgagttgctccatagtactcaatatattactcacctccacta----cctcaaccacccttctcttgtttttttctt 1918364  T
Q  564 ttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttccacacagttatcttacataatatgc 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  1918363 ttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttccacacaattatcttacataatattc 1918264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 611 - 657
Target Start/End: Complemental strand, 1872289 - 1872243
Alignment:
Q  611 tcttatccacactgtactttcattcttccacacagttatcttacata 657  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  1872289 tcttatccacactgtactttcattcttccaaacaattaccttacata 1872243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 71 - 442
Target Start/End: Complemental strand, 17492182 - 17491812
Alignment:
Q  71 tttttataaataagatttgttaaggcaagttgaatgagga--ctcactagtatcaagaaaataaattttgagaatccaagatcatttacaaatataatta 168  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17492182 tttttataaataagattagttaaggcaagttgaatgatgagactcactagtatcaagaaaataaattttgagaatccaagatcatttacaaatataatta 17492083  T
Q  169 tttattatccatatcaatgagattctcacgtggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatacgacccaca 268  Q
    |||||||||| |  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  17492082 tttattatccgt--caatgaaattctcacttggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatatgacc-aca 17491986  T
Q  269 aataaaaattatttgagcacacatcaacaattcagaaaattaaaagcgaaataatttatctttaattattttcatttgtgtacattcaaataattttgat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17491985 aataaaaattatttgagcacacatcaacaattcagaaaattaaaagcgaaataatttatctttaattatttccatttgtgtacattcaaataattttgat 17491886  T
Q  369 ttgagattgtgcccaaaacttactctttttagcaagtggataatcttaacatataataatttgaaacaatatta 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17491885 ttgagattgtgcccaaaacttactctttttagcaagtgaataatcttaacatataataatttgaaacaatatta 17491812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 71 - 442
Target Start/End: Original strand, 17561032 - 17561402
Alignment:
Q  71 tttttataaataagatttgttaaggcaagttgaatgagga--ctcactagtatcaagaaaataaattttgagaatccaagatcatttacaaatataatta 168  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17561032 tttttataaataagattagttaaggcaagttgaatgatgagactcactagtatcaagaaaataaattttgagaatccaagatcatttacaaatataatta 17561131  T
Q  169 tttattatccatatcaatgagattctcacgtggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatacgacccaca 268  Q
    |||||||||| |  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  17561132 tttattatccgt--caatgaaattctcacttggacaatatgattcgaactaattatctttaactaatatgaatttaatacttacttgtatatgacc-aca 17561228  T
Q  269 aataaaaattatttgagcacacatcaacaattcagaaaattaaaagcgaaataatttatctttaattattttcatttgtgtacattcaaataattttgat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17561229 aataaaaattatttgagcacacatcaacaattcagaaaattaaaagcgaaataatttatctttaattatttccatttgtgtacattcaaataattttgat 17561328  T
Q  369 ttgagattgtgcccaaaacttactctttttagcaagtggataatcttaacatataataatttgaaacaatatta 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17561329 ttgagattgtgcccaaaacttactctttttagcaagtgaataatcttaacatataataatttgaaacaatatta 17561402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 441 - 667
Target Start/End: Complemental strand, 17491516 - 17491306
Alignment:
Q  441 tatatatgcacactcaatatgacaatgacaaactcaagatgatgaagtgagttgctccatagtactcaatatattactcacctccactacctccctcaac 540  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||    
T  17491516 tatatatacacaatcaatatgacaatgacaaactcaagatgatgaagtgagttgctccatagtactcaa----------------actacctccctcaac 17491433  T
Q  541 cacccttctcttgnnnnnnncttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttcca 640  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17491432 cacccttctcttgtttttttcttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttcca 17491333  T
Q  641 cacagttatcttacataatatgcttgg 667  Q
    |||| |||||||||||||||| |||||    
T  17491332 cacaattatcttacataatattcttgg 17491306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 441 - 667
Target Start/End: Original strand, 17561698 - 17561908
Alignment:
Q  441 tatatatgcacactcaatatgacaatgacaaactcaagatgatgaagtgagttgctccatagtactcaatatattactcacctccactacctccctcaac 540  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||    
T  17561698 tatatatacacaatcaatatgacaatgacaaactcaagatgatgaagtgagttgctccatagtactcaa----------------actacctccctcaac 17561781  T
Q  541 cacccttctcttgnnnnnnncttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttcca 640  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17561782 cacccttctcttgtttttttcttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgtactttcattcttcca 17561881  T
Q  641 cacagttatcttacataatatgcttgg 667  Q
    |||| |||||||||||||||| |||||    
T  17561882 cacaattatcttacataatattcttgg 17561908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 17493716 - 17493663
Alignment:
Q  18 ctctctttttcacttctttttatttataattcacaatcaattgtccaatcttct 71  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17493716 ctctctttttcatttctttttatttataattcacaatcaattgtccaattttct 17493663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17559498 - 17559551
Alignment:
Q  18 ctctctttttcacttctttttatttataattcacaatcaattgtccaatcttct 71  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17559498 ctctctttttcatttctttttatttataattcacaatcaattgtccaattttct 17559551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 2938961 - 2939014
Alignment:
Q  18 ctctctttttcacttctttttatttataattcacaatcaattgtccaatcttct 71  Q
    |||||||||| |||||||||||||||||| |||||||| ||| |||||| ||||    
T  2938961 ctctcttttttacttctttttatttataagtcacaatcgattatccaattttct 2939014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 50089166 - 50089112
Alignment:
Q  18 ctctctttttcacttctttttatttataattcacaatcaattgtccaatcttctt 72  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||| |||||    
T  50089166 ctctctttttcacttctttttatttacaagtcacaatcaattttccaattttctt 50089112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 29167993 - 29167957
Alignment:
Q  20 ctctttttcacttctttttatttataattcacaatca 56  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  29167993 ctctttttcacttctttttttttataagtcacaatca 29167957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 26602524 - 26602572
Alignment:
Q  18 ctctctttttcacttctttttatttataattcacaatcaattgtccaat 66  Q
    |||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  26602524 ctctctttttcagttctttttatttataagtcacaatcaattttccaat 26602572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 28641486 - 28641523
Alignment:
Q  22 ctttttcacttctttttatttataattcacaatcaatt 59  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28641486 ctttttcacttctttttatttataagtcacaatcaatt 28641523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 28744704 - 28744740
Alignment:
Q  23 tttttcacttctttttatttataattcacaatcaatt 59  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28744704 tttttcacttctttttatttataagtcacaatcaatt 28744740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10673 - 10633
Alignment:
Q  19 tctctttttcacttctttttatttataattcacaatcaatt 59  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  10673 tctctttttcacttctttttatttataagtcgcaatcaatt 10633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 8542348 - 8542390
Alignment:
Q  18 ctctctttttcacttcttttta-tttataattcacaatcaatt 59  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  8542348 ctctctttttcacttctttttattttataagtcacaatcaatt 8542390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University