View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_61 (Length: 246)
Name: NF20775_high_61
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9706383 - 9706621
Alignment:
| Q |
1 |
ttcaattactaatgtgctaatgtttgctaaaattaatacacatgattccatttcttaacattttgagaaggaacctgttgccatgctagtcaacagaaat |
100 |
Q |
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| T |
9706383 |
ttcagttactaatgtgctaatgtttgctaaaattaatacgcatgattccatttcttaacattttgagaaggaacctgttgccatgctagtcaacagaaat |
9706482 |
T |
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| Q |
101 |
ttggatcctctttgttcttgaaaatctcaaatatttg--ttgagtatttaaaagcaagtgttccg------ttaactccttcaggattatattcttccaa |
192 |
Q |
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| T |
9706483 |
ttggatcctctttgttcttgaaaatctcaaatatttgttttgagtatttaaaagcaagtgttccgcaagttttaactccttcgggattatattcttccaa |
9706582 |
T |
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| Q |
193 |
ctcctccacagttttctttagaccatcataaggactgtc |
231 |
Q |
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| T |
9706583 |
ctcctccacagttttctttagaccatcataaggactgtc |
9706621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9752050 - 9752164
Alignment:
| Q |
9 |
ctaatgtgctaatgtttg--ctaaaattaatacacatgattccatttcttaaca-ttttgagaaggaacctgttgccatgctagtcaacagaaatttgga |
105 |
Q |
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| T |
9752050 |
ctaatgtgctaatgttttttctaaatttaatactcatgattccatttcttatcatttttggaaaggaacctgttgctgtgatattcaagggaaaagtgga |
9752149 |
T |
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| Q |
106 |
tcctctttgttcttg |
120 |
Q |
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| T |
9752150 |
tcctctttgttcttg |
9752164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 9800378 - 9800508
Alignment:
| Q |
11 |
aatgtgctaatgtttg-ctaaaattaatacacatgattccatttcttaacattttgagaa-ggaacctgttgccatgctagtcaacagaaatttggatcc |
108 |
Q |
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| T |
9800378 |
aatgtgctaatgtttttctaaatttattacacatgattccatttgttataatttttggaaaggaacctgttgctgtgatagtcaagggaaaaatggatcc |
9800477 |
T |
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| Q |
109 |
tctttgttcttgaaaatctcaaatatttgtt |
139 |
Q |
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| T |
9800478 |
tctttgttcacgaaaatctcatatagttgtt |
9800508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 9827054 - 9827173
Alignment:
| Q |
44 |
gattccatttcttaacattttgagaaggaa-cctgttgccatgctagtcaacagaaatttggatcctctttgttcttgaaaatctcaaatatttg--ttg |
140 |
Q |
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| T |
9827054 |
gattccatttcttatcatttttggaaagaaacctgtttctgtgatagtcaagggaaaaatggatcctctttgttcttgaaaatttcatgtagttgttttg |
9827153 |
T |
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| Q |
141 |
agtatttaaaagcaagtgtt |
160 |
Q |
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|||| ||||||||||||||| |
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| T |
9827154 |
agtagttaaaagcaagtgtt |
9827173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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