View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_62 (Length: 245)
Name: NF20775_high_62
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36542108 - 36541869
Alignment:
| Q |
1 |
aaatggggaaaagagtaaaagaaaatgagtgaggcatgttgatctctacgtgaagtttgtgcggtgttttaatcatatatggagttccaggtcataaaat |
100 |
Q |
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| T |
36542108 |
aaatggggaaaagagtaaaagaaaacgagtgaggcatgttgatctctacgtgaagtttgtgcggtattttaatcatatatggagttccaggtcacaaaat |
36542009 |
T |
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| Q |
101 |
ggataaggaacagtggaacatgaaagataacatccatatctataacttttatgaagacaccaaagtccaatgtggtctacaaaaaggtgaaaaatgtaat |
200 |
Q |
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| T |
36542008 |
ggataaggaacagtggaacatgaaagataacatccatatctagaacttttatgaagacaccaaagtccaatgtggcctacaaaaaggtgaaaaatgtaat |
36541909 |
T |
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| Q |
201 |
tcatgtgatatttattttctatcaaggtggttgatctctg |
240 |
Q |
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| T |
36541908 |
tcatgtgatatttatttcctatcaaggtggttgatctctg |
36541869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 32689195 - 32689033
Alignment:
| Q |
9 |
aaaagagtaaaagaaaatgagtgaggcatgttgatctctacgtgaagtttgtgcggtgttttaatcatatatggagttccaggtcataaaatggataagg |
108 |
Q |
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| T |
32689195 |
aaaagagtgaaagaacactagtgaggcatgctgatctctacatgttatttgtgcggtgttttaatcatatatgaagttgtaggactcataatggagatag |
32689096 |
T |
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| Q |
109 |
aacagtggaacatgaaagataacatccatatctataacttttatgaagacaccaaagtccaat |
171 |
Q |
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| T |
32689095 |
gccagtggaatatgaaatttcacatccatatccaacactttcatgcagacaccaaagtccaat |
32689033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 31343711 - 31343748
Alignment:
| Q |
124 |
aagataacatccatatctataacttttatgaagacacc |
161 |
Q |
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| T |
31343711 |
aagataacatccatatctataactttcatgaagacacc |
31343748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 15871391 - 15871350
Alignment:
| Q |
123 |
aaagataacatccatatctataacttttatgaagacaccaaa |
164 |
Q |
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| T |
15871391 |
aaagctaacatgcatatctacaacttttatgaagacaccaaa |
15871350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 16999737 - 16999692
Alignment:
| Q |
115 |
ggaacatgaaagataacatccatatctataacttttatgaagacac |
160 |
Q |
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| T |
16999737 |
ggaaaatgaaagataacattcatatctacaactttcatgaagacac |
16999692 |
T |
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