View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_63 (Length: 243)
Name: NF20775_high_63
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 26342010 - 26341787
Alignment:
| Q |
2 |
gcttcaattttgagaatacaaataaccagtctaaatacaaagcatgcctagccagactccaacacgtagcagaaatagggactcaagaaatactgctcag |
101 |
Q |
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| T |
26342010 |
gcttcaattttgtgaatacaaataaccagtctgaatacaaaacatgcctagccagactccaacacgtagcagaaatagggactcaagaaatactgctcaa |
26341911 |
T |
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| Q |
102 |
gtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatttgtgcctcgttaaataaaccatctga |
201 |
Q |
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| T |
26341910 |
gtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatttgtgcctcgttaaataaatcatctga |
26341811 |
T |
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| Q |
202 |
agattcaagttggtaaggctcaga |
225 |
Q |
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| T |
26341810 |
agattcaagttggtaaggctcaga |
26341787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 26348611 - 26348539
Alignment:
| Q |
38 |
acaaagcatgcctagccagactccaacacgtagcagaaatagggactcaagaaatactgctcaggtcggactt |
110 |
Q |
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|||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| ||| |||| |||||| |
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| T |
26348611 |
acaaagcatgcctatcttgactccaacacgtagcataaatagggactcaataaataccgcttaggtaggactt |
26348539 |
T |
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