View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20775_high_66 (Length: 239)
Name: NF20775_high_66
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_66 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20990780 - 20991000
Alignment:
| Q |
1 |
tacattgcaagaaaccgtagacaagatagttttgaccaacttcgttgagcacaattttcttctcttccatttcagttagtatcttcttcacattccaacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20990780 |
tacattgcaagaaaccatagacaagatagttttgaccaacttcgttgagcacaattttcttctcttccatttcagttagtatcttcttcacat-ccaacc |
20990878 |
T |
|
| Q |
101 |
ggtttccaagtatggccatacatacttggaaacttttattagaagattttaagtgatccattatgttgggggttatggacaatggtccctttgtcggata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20990879 |
ggtttccaagtatggccatacatacttggaaacttttattagaagattttaagtgatccattatgttgggggttatggacaatggtccctttgtcggata |
20990978 |
T |
|
| Q |
201 |
ttattcacgtagctatagaagc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20990979 |
ttattcacgtagctatagaagc |
20991000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 20979912 - 20979797
Alignment:
| Q |
107 |
caagtatggccatacatacttggaaacttttattagaagattttaagtgatccattatgttgggggttatggacaatggtccctttgtcggatattattc |
206 |
Q |
| |
|
||||||||| |||||||||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20979912 |
caagtatggacatacatactaggcaaagtttattagaagatattaagtgatccattgtgttgggggttatggacaatggtccctttgtcagatattattc |
20979813 |
T |
|
| Q |
207 |
acgtagctatagaagc |
222 |
Q |
| |
|
| |||| | ||||||| |
|
|
| T |
20979812 |
atgtagatctagaagc |
20979797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21002048 - 21002154
Alignment:
| Q |
1 |
tacattgcaagaaaccgtagacaagatagttttgaccaacttcgttgagcacaattttcttctcttccatttcagttagtatcttcttcacattccaacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||| |||||| |
|
|
| T |
21002048 |
tacattgcaagaaaccatagacaagatagttttgaccaacttcgtcgagtacaattttcttctctttcatatcagttagtatcttcttaaca-tccaact |
21002146 |
T |
|
| Q |
101 |
ggtttcca |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
21002147 |
ggtttcca |
21002154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 20992664 - 20992564
Alignment:
| Q |
107 |
caagtatggccatacatacttggaaacttttattagaagattttaagtgatccattatgttgggggttatggacaatggtccctttgtcggatattattc |
206 |
Q |
| |
|
||||||||| || ||||| |||| || |||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
20992664 |
caagtatggacacacatatttggtaaattttattagaagatatcaagtgatccattatgttgggggtcatagagaatggtccctttgtcggatattattc |
20992565 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
20992564 |
a |
20992564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 20978808 - 20978863
Alignment:
| Q |
107 |
caagtatggccatacatacttggaaacttttattagaagattttaagtgatccatt |
162 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
20978808 |
caagtatggacatacatacttggaaacttcgattagaagatattaagtgatccatt |
20978863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University