View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_67 (Length: 238)
Name: NF20775_high_67
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 17253481 - 17253693
Alignment:
| Q |
9 |
acatcatcaacaggaatatcactatctggatcattatcaggaaaccctacaaacccaccaagaggaaaagctctaattgaatattcaacattttttgcat |
108 |
Q |
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| T |
17253481 |
acatcatcaacaggaatatcactatctggatcattatcaggaaaccctacaaacccaccaagaggaaaagctctaattgaatattcaacattttttgcat |
17253580 |
T |
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| Q |
109 |
taaacttagctaaaattggaccaaacccaacagcaaatttactcacatgaatcccttgaagagaagcagcaagaaaatgaccactttcatgaacaacaat |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17253581 |
taaacttagctaaaattggaccgaacccaacagcaaatttactcacatgaatcccttgaagagaagcagcaagaaaatgaccactttcatgaacaacaat |
17253680 |
T |
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| Q |
209 |
gatagctgtcaat |
221 |
Q |
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||||||||||||| |
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| T |
17253681 |
gatagctgtcaat |
17253693 |
T |
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