View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_high_70 (Length: 237)
Name: NF20775_high_70
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_70 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 43808946 - 43808714
Alignment:
| Q |
5 |
tacattattctaataatatacactagctactactttagcaaggatacttcttgtttccttataataaggactggagcgagtactaatacggatactttag |
104 |
Q |
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| T |
43808946 |
tacatttttctaataatatacactagctactactttagcaaggatacttcttgttttcttataataaggactggagcgagtactaatacggatactttag |
43808847 |
T |
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| Q |
105 |
taagtaaaactcattttatcaataagcacactcaatgattttcttaagaagtgtgcataaccttataaagacacttaatataagacagagggagtacaat |
204 |
Q |
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| T |
43808846 |
taagtaaaactcattttatcaataagcacactcaatgattttcttaagaagtgtgcataaccttataaagacacttaatataagacagagggagtacaat |
43808747 |
T |
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| Q |
205 |
ctataggacagcaaaggagacttaaagtgaact |
237 |
Q |
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| T |
43808746 |
ctataggacagcaaaggagacttaaagtgaact |
43808714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 45566280 - 45566222
Alignment:
| Q |
132 |
acactcaatgattttcttaagaagtgtgcataaccttataaagacacttaatataagaca |
191 |
Q |
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| T |
45566280 |
acactcaatgattttcttaagaagtgtacattacttta-aaagacacttaatatgagaca |
45566222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 5399328 - 5399292
Alignment:
| Q |
130 |
gcacactcaatgattttcttaagaagtgtgcataacc |
166 |
Q |
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| T |
5399328 |
gcacactcaatgattttcttaacaagtgtgcctaacc |
5399292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 45842500 - 45842568
Alignment:
| Q |
130 |
gcacactcaatgattttcttaagaagtgtgcataaccttataaagacacttaatataagacagagggagt |
199 |
Q |
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| T |
45842500 |
gcacaatcaatggttttcttaagaagcgtgcataacctta-aaccacacttaatatgagacagagggagt |
45842568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 22742581 - 22742544
Alignment:
| Q |
132 |
acactcaatgattttcttaagaagtgtgcataacctta |
169 |
Q |
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| T |
22742581 |
acactcaacgattttattaagaagtgtgcataacctta |
22742544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 14299554 - 14299591
Alignment:
| Q |
132 |
acactcaatgattttcttaagaagtgtgcataacctta |
169 |
Q |
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| T |
14299554 |
acactcaatgattttctttagaaatgtgcataacctta |
14299591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 17311635 - 17311686
Alignment:
| Q |
133 |
cactcaatgattttcttaagaagtgtgcataaccttataaagacacttaatat |
185 |
Q |
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| T |
17311635 |
cactcaatggttttcttaagaagtgcacataacctta-aacgacacttaatat |
17311686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 49987868 - 49987900
Alignment:
| Q |
132 |
acactcaatgattttcttaagaagtgtgcataa |
164 |
Q |
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| T |
49987868 |
acactcaatgattttgttaagaagtgtgcataa |
49987900 |
T |
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