View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_high_74 (Length: 217)

Name: NF20775_high_74
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_high_74
NF20775_high_74
[»] chr6 (3 HSPs)
chr6 (45-153)||(7875046-7875153)
chr6 (45-191)||(7884897-7885042)
chr6 (45-153)||(7880293-7880399)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 7875153 - 7875046
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  7875153 atgttttccttcttcaattcataagggaagatggccatagtgatatataatttgatcgagagaaaagtaaattttaccaagattatttcaattagaa-tt 7875055  T
Q  145 tacaatcaa 153  Q
    |||||||||    
T  7875054 tacaatcaa 7875046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 7885042 - 7884897
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||| ||||||| ||||||||||||| ||    
T  7885042 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagaggtaagtgaattttgccaagatgatttcaattagaa-tt 7884944  T
Q  145 tacaatcaaactctctaaaatgatttagtactaaccgaatctcatta 191  Q
    |||||||| | | ||||||||| |||| || |||| |||||| ||||    
T  7884943 tacaatcatattatctaaaatggtttattattaactgaatcttatta 7884897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 7880399 - 7880293
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    |||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  7880399 atgttttccttcttcaattcataagg-aagatggccatagtgatatataatttgatcgagagaaaagtaaattttaccaagattatttcaattagaa-tt 7880302  T
Q  145 tacaatcaa 153  Q
    |||||||||    
T  7880301 tacaatcaa 7880293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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