View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20775_high_8 (Length: 611)
Name: NF20775_high_8
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 3 - 599
Target Start/End: Complemental strand, 41437556 - 41436961
Alignment:
| Q |
3 |
cacagagaagctttgtcaacaattgaatcattggatggaggaaaagcatataatgaaataagtacatcaaaacaagaattaaaagaggcaaacaaagatg |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41437556 |
cacagagaagctttgtccacaattgaatcattggatggaggaaaagcatataatgaaataagtacatcaaaacaaaaattaaaagaggcaaacaaagatg |
41437457 |
T |
|
| Q |
103 |
agcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437456 |
agcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaa |
41437357 |
T |
|
| Q |
203 |
gtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattggaagcaactattggatggct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437356 |
gtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattggaagcaactattggatggct |
41437257 |
T |
|
| Q |
303 |
tgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattggaagttctttatgcattc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437256 |
tgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattggaagttctttatgcattc |
41437157 |
T |
|
| Q |
403 |
ttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41437156 |
ttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttt |
41437057 |
T |
|
| Q |
503 |
tgattctactccaagtggtcgaatccttaatagagtatgtcataccaacatt-ttttccatttcttgcccattgcttttcagagagatatgatttttg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41437056 |
tgattctactccaagtggtcgaatccttaatagagtatgtcataccaacatttttttccatttcttgcccattgcttttc--agagatatgatttttg |
41436961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 3 - 584
Target Start/End: Complemental strand, 41450782 - 41450200
Alignment:
| Q |
3 |
cacagagaagctttgtcaacaattgaatcattggatggaggaaaagcatataatgaaataagtacatcaaaacaagaattaaaagaggcaaacaaagatg |
102 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
41450782 |
cacagagaggctttgtctacacttgaatcattggatggaggaaaagcatgtaatgaaataagtacatcagaacaagaagtaaaagaggcaaacaaagatg |
41450683 |
T |
|
| Q |
103 |
agcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450682 |
agcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaa |
41450583 |
T |
|
| Q |
203 |
gtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattggaagcaactattggatggct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450582 |
gtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagctcttcaaattggaagcaactattggatggct |
41450483 |
T |
|
| Q |
303 |
tgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattggaagttctttatgcattc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41450482 |
tgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttggttttgccattggaagttctttatgcattc |
41450383 |
T |
|
| Q |
403 |
ttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttt |
502 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41450382 |
ttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttt |
41450283 |
T |
|
| Q |
503 |
tgattctactccaagtggtcgaatccttaatagagtatgtcataccaacattttttccatttcttgccca-ttgcttttcaga |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41450282 |
tgattctactccaagtggtcgaatccttaatagagtatgtcacactaacattttttccatttcttgcccatttgcttttcaga |
41450200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 566
Target Start/End: Complemental strand, 14239725 - 14239144
Alignment:
| Q |
3 |
cacagagaagctttgtcaacaattgaatcattggatggaggaaaagcatataatgaaataagtacatcaaaacaagaattaaa----------------- |
85 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||| ||| |
|
|
| T |
14239725 |
cacagagaagctttgtccacacttgaatcattggatgaaggaaaaacatctaatgaaataagtacattagaacaagaagaaaatatctctggcacacatg |
14239626 |
T |
|
| Q |
86 |
-agaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttgg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14239625 |
aagaggcaaacaaagatgagcaaaatggtaaatcaggtgataaaggcgaaccacaaggccaactcgttcaagaagaagaaagggaaaaaggtaaagttgg |
14239526 |
T |
|
| Q |
185 |
attttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgga |
284 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
14239525 |
attttcagtgtattggaagtatatcacaactgcatatgggggagttcttgtaccattcatattattggctcatattcttcttcaagctcttcaaattgga |
14239426 |
T |
|
| Q |
285 |
agcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattg |
384 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
14239425 |
agcaactattggatggctttggcaactcccatctcagccgatgtcaagccaccgattgaaggaacaactcttatgaaagtctatgttggtttggccattg |
14239326 |
T |
|
| Q |
385 |
gaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccg |
484 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239325 |
gaagttctctatgcattcttgttaaagggttgttacttgttacagctggttataagacagctactatactcttcaataaaatgcacttgtgcattttccg |
14239226 |
T |
|
| Q |
485 |
tgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacattttttccatttct |
566 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14239225 |
tgccccgatgtcattttttgattctactccaagtggacgaatcctcaatagagtatgtcatactggcattttttccgtttct |
14239144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 3 - 454
Target Start/End: Original strand, 14373624 - 14374093
Alignment:
| Q |
3 |
cacagagaagctttgtcaacaattgaatcattggatggaggaaaagcatataatgaaataagtacatcaaaacaagaattaa------------------ |
84 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| ||| |||||| |||||||||| |||||||| ||| |
|
|
| T |
14373624 |
cacagagaagctttgtctgcacttgaatcattggatggaggaaaaacatctaatgagataagtacattcgaacaagaagtaagtatctctggcactcatg |
14373723 |
T |
|
| Q |
85 |
aagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttgg |
184 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14373724 |
aagaggcaaccaaagatgtgcaaaatggtaaagcagatgataatagcgaaccgaaaaaccaacttgttcaagaagaagaaagggagaaaggtaaagttgg |
14373823 |
T |
|
| Q |
185 |
attttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagctcttcaaattgga |
284 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
14373824 |
gttttcggtgtattggaagtatatcacaactgcatatggaggatctgtcgtaccattcatattattggcctatattctttttcaagctcttcaaattgga |
14373923 |
T |
|
| Q |
285 |
agcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtggttttgccattg |
384 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||| || ||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
14373924 |
agcaactactggatggcgtgggcaactcccatctcagcagatgtggagccacctgttgaagggacgactcttattgaagtctatgttggtttggcctttg |
14374023 |
T |
|
| Q |
385 |
gaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatact |
454 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14374024 |
caagttctatatgcattcttgttagatctatgttacttgttacagttggttgtaagacagctactatact |
14374093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 546
Target Start/End: Original strand, 14374918 - 14375015
Alignment:
| Q |
449 |
tatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtcata |
546 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || ||||| |||| ||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14374918 |
tatactcttcaaaaaaatgcacttgtgtatctttcgcgcccccatgtcatttttcgattctactccaagtggacggatccttaatagagtatgtcata |
14375015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 139 - 542
Target Start/End: Complemental strand, 22749575 - 22749172
Alignment:
| Q |
139 |
aaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtacc |
238 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||| ||||||||||||| ||||| || || ||||| ||||| || || ||||||||||| ||||||| || |
|
|
| T |
22749575 |
aaggacaacttgttcaagaagaagaaagagagcaaggtaaagttgggttttcggtgtactggaaatatataacgacggcatatggaggtgctcttgtgcc |
22749476 |
T |
|
| Q |
239 |
gttcatattattctctcagattctttttcaagctcttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacct |
338 |
Q |
| |
|
| || |||| | || | || | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |
|
|
| T |
22749475 |
gctcgtattgatagctgaaatcatgtttcaacttcttcaaattggaagcaactattggatggcttcttcaactcccatctcaaaagatatggagccacct |
22749376 |
T |
|
| Q |
339 |
gttgaaggaacaactcttattgaagtctatggtggttttgccattggaagttctttatgcattcttgttagagcattgttactttgtacagttggttata |
438 |
Q |
| |
|
|||| |||||| || || | | ||||||| |||| ||||| |||||||||||||| | || ||||||| | || || | |||||||| |
|
|
| T |
22749375 |
gttggaggaactacactcctagttgtctatgtatgtttggccataggaagttctttatgtgtcctatctagagcaacacttgttgtcaccgctggttata |
22749276 |
T |
|
| Q |
439 |
agacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaatagagt |
538 |
Q |
| |
|
| ||||||||| |||||||||| |||||||| | |||||||| || || || |||| ||||||||| | ||||||||||| ||||||||||||| || |
|
|
| T |
22749275 |
aaacagctactctactcttcaacaaaatgcatctctgcatttttcgcgctccaatgtctttttttgatgccactccaagtggaagaatccttaatagggt |
22749176 |
T |
|
| Q |
539 |
atgt |
542 |
Q |
| |
|
|||| |
|
|
| T |
22749175 |
atgt |
22749172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 544
Target Start/End: Original strand, 22741911 - 22741966
Alignment:
| Q |
489 |
ccgatgtggttttttgattctactccaagtggtcgaatccttaatagagtatgtca |
544 |
Q |
| |
|
||||||| |||||||||| | || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
22741911 |
ccgatgtcgttttttgatgcgacaccaagtggacgaattcttaatagagtatgtca |
22741966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 546
Target Start/End: Complemental strand, 32119505 - 32119393
Alignment:
| Q |
434 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtggttttttgattctactccaagtggtcgaatccttaat |
533 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| | ||| || || ||||| | | ||||| |||||||||||||||| | ||| ||||| |
|
|
| T |
32119505 |
ttataagacagctcctatactcttcaagaaaatgcacttttacatctttcgcgcccccgtataatttttcaattctactccaagtggacagatctttaat |
32119406 |
T |
|
| Q |
534 |
agagtatgtcata |
546 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32119405 |
agagtatgtcata |
32119393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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