View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_1 (Length: 1141)

Name: NF20775_low_1
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_1
NF20775_low_1
[»] chr2 (15 HSPs)
chr2 (16-1128)||(6566999-6568112)
chr2 (16-68)||(5574194-5574246)
chr2 (16-68)||(38594428-38594480)
chr2 (16-68)||(38598024-38598076)
chr2 (16-67)||(34248499-34248550)
chr2 (17-68)||(38594348-38594399)
chr2 (17-68)||(38597944-38597995)
chr2 (16-70)||(1981068-1981122)
chr2 (16-73)||(20504242-20504299)
chr2 (16-69)||(25278177-25278230)
chr2 (17-66)||(30902358-30902407)
chr2 (17-65)||(3887840-3887888)
chr2 (16-68)||(3887917-3887969)
chr2 (16-72)||(43426628-43426684)
chr2 (16-66)||(34248421-34248471)
[»] chr4 (10 HSPs)
chr4 (894-1128)||(49289816-49290053)
chr4 (894-1128)||(49296767-49297004)
chr4 (894-1128)||(49303497-49303734)
chr4 (16-68)||(13689540-13689592)
chr4 (16-68)||(52817651-52817703)
chr4 (16-68)||(55087795-55087847)
chr4 (16-65)||(5418599-5418648)
chr4 (16-72)||(5418515-5418571)
chr4 (16-67)||(24941116-24941167)
chr4 (16-66)||(44156084-44156134)
[»] chr1 (17 HSPs)
chr1 (16-68)||(31008263-31008315)
chr1 (16-68)||(4060255-4060307)
chr1 (16-68)||(27206843-27206895)
chr1 (17-68)||(17490492-17490543)
chr1 (16-68)||(639803-639855)
chr1 (16-68)||(6065465-6065517)
chr1 (16-68)||(6065545-6065597)
chr1 (16-68)||(33604075-33604127)
chr1 (16-68)||(37734857-37734909)
chr1 (16-68)||(48022599-48022651)
chr1 (16-65)||(2352979-2353028)
chr1 (16-68)||(8258027-8258079)
chr1 (16-68)||(31008343-31008395)
chr1 (16-68)||(34658390-34658442)
chr1 (16-72)||(2349840-2349897)
chr1 (16-77)||(37734768-37734829)
chr1 (16-68)||(40262552-40262602)
[»] chr7 (12 HSPs)
chr7 (16-73)||(25079206-25079263)
chr7 (16-68)||(38238868-38238920)
chr7 (16-78)||(25079291-25079353)
chr7 (16-67)||(4406422-4406473)
chr7 (16-68)||(34703527-34703579)
chr7 (16-68)||(40416990-40417042)
chr7 (16-72)||(45000685-45000741)
chr7 (16-68)||(46943948-46944000)
chr7 (16-67)||(22106672-22106723)
chr7 (641-676)||(28835223-28835258)
chr7 (16-67)||(40529628-40529679)
chr7 (16-68)||(38238787-38238840)
[»] chr6 (6 HSPs)
chr6 (16-68)||(17773585-17773637)
chr6 (16-68)||(21506467-21506519)
chr6 (16-68)||(21998123-21998175)
chr6 (16-68)||(31536315-31536367)
chr6 (16-66)||(17268019-17268069)
chr6 (16-66)||(30460697-30460747)
[»] chr3 (18 HSPs)
chr3 (16-68)||(52168287-52168339)
chr3 (16-68)||(29565113-29565165)
chr3 (16-68)||(36362608-36362660)
chr3 (16-68)||(38455249-38455301)
chr3 (16-68)||(51239327-51239379)
chr3 (16-67)||(42449110-42449161)
chr3 (17-68)||(51239247-51239298)
chr3 (16-66)||(33412549-33412599)
chr3 (16-66)||(36362688-36362738)
chr3 (16-81)||(50260924-50260989)
chr3 (16-68)||(29720160-29720212)
chr3 (16-68)||(51617335-51617387)
chr3 (16-68)||(52931757-52931809)
chr3 (16-78)||(12568452-12568514)
chr3 (16-78)||(13544916-13544978)
chr3 (16-61)||(22173806-22173851)
chr3 (19-68)||(51617418-51617467)
chr3 (16-65)||(52315474-52315523)
[»] chr8 (8 HSPs)
chr8 (17-68)||(40098764-40098815)
chr8 (16-68)||(1739649-1739701)
chr8 (16-68)||(9056105-9056157)
chr8 (16-68)||(14381242-14381294)
chr8 (16-68)||(40098844-40098896)
chr8 (16-73)||(14381322-14381379)
chr8 (16-67)||(26014574-26014625)
chr8 (16-73)||(13211323-13211380)
[»] scaffold0039 (2 HSPs)
scaffold0039 (16-68)||(54392-54444)
scaffold0039 (16-65)||(54472-54521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (16-68)||(120229-120281)
[»] chr5 (18 HSPs)
chr5 (16-68)||(23914845-23914897)
chr5 (16-68)||(26300115-26300167)
chr5 (16-68)||(43446863-43446915)
chr5 (16-70)||(37944686-37944740)
chr5 (16-65)||(3851370-3851419)
chr5 (16-69)||(11262331-11262384)
chr5 (16-73)||(37944601-37944658)
chr5 (16-68)||(3851447-3851499)
chr5 (16-68)||(13311179-13311230)
chr5 (16-72)||(13311258-13311314)
chr5 (16-79)||(35969121-35969185)
chr5 (16-68)||(42013826-42013878)
chr5 (16-79)||(13157326-13157389)
chr5 (26-72)||(9707133-9707179)
chr5 (16-65)||(19531385-19531434)
chr5 (15-68)||(37870100-37870153)
chr5 (16-65)||(38835532-38835581)
chr5 (16-73)||(42013906-42013963)
[»] scaffold0007 (2 HSPs)
scaffold0007 (16-67)||(246800-246851)
scaffold0007 (16-67)||(246879-246930)


Alignment Details
Target: chr2 (Bit Score: 1030; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1030; E-Value: 0
Query Start/End: Original strand, 16 - 1128
Target Start/End: Original strand, 6566999 - 6568112
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtatgcattacggcattaatgttgcaactcagattttgttg 115  Q
    ||||||||||| ||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  6566999 catcattaattgaatatatctaaatagtggatttttgcttatattagtgaccggaggacgtatgcattacggcattaatgttgcaacacagattttgttg 6567098  T
Q  116 cttatctcttggcctagcattctaattaaaatggaaaatttcaaacctattcctttttggacaagacttcttttgaatttagtttagttaaattgttgat 215  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567099 tttatctcttggcctagcattctaattaaaatggaaaatatcaaacctattcctttttggacaagacttcttttgaatttagtttagttaaattgttgat 6567198  T
Q  216 aaacaattatttacaagcatgatgctccaaacacacgattaaactttacacataacatcatattctaaggtgtcgatcctttaaataaatttcaatattt 315  Q
    || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  6567199 aagcaactatttacaagcatgatgctcaaaacacacgattaaactttacacataacatcatactctgaggtgtcgatcctttaaatgaatttcaatattt 6567298  T
Q  316 tgaaaaattagtctttgtaccttaaacctctaaaatataatctaaaaaattaagagattagtcttcgtaacttaaagatccggaaaa-aagtataaaatt 414  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6567299 taaaaaattagtctttgtaccttaaacctctaaaatataatctaaaaaattaagagattagtcttcgtaacttaaagatccggaaaaaaagtataaaatt 6567398  T
Q  415 tcgtttggcaaaaacacaaggctacatttgatatataagaaaaggctattacacattgataagtcaagtttattagccttattatgacacattagtagca 514  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567399 tcgtttagcaaaaacacaaggctacatttgatatataagaaaaggctattacacattgataagtcaagtttattagccttattatgacacattagtagca 6567498  T
Q  515 tacactcatgtatatatttttagtcttaacccttcgctttccacgagaaagactttaataatccggagtttgatcggttggtaaataaaatctttcaacc 614  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567499 tacactcatgtatatatttttagtcttaacccttcgcttttcacgagaaagactttaataatccggagtttgatcggttggtaaataaaatctttcaacc 6567598  T
Q  615 tgaattcaaatttttgttcttccaagcgattcgtccttaacttgagctcatcaaacacttgagcttgatcacctggtcgtagcttacagtaatcttctaa 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  6567599 tgaattcaaatttttgttcttccaagcgattcgtccttaacttgagctcatcaaacacttgagcttgatcacttggtcgtagcttacattaatcttctaa 6567698  T
Q  715 tatacatacatagctgcagtagcattaatatatcctgccggccatactatatataatctcatcattatacaagtaaagtaaccaaaacagatttattata 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567699 tatacatacatagctgcagtagcattaatatatcctgccggccatactatatataatctcatcattatacaagtaaagtaaccaaaacagatttattata 6567798  T
Q  815 acatatatagtattatgagagttcaattaatcaaacccaaatagctcctgctcttctaagcattggaatcagagacctattaaggtgaaggctcataact 914  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567799 acatatatagtattatgagagttcaattaatcaaacccaaatagctcctgctcttctaagcattggaatcagagacctattaaggtgaaggctcataact 6567898  T
Q  915 tcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaagtgcttgttcaatgtctctccctccac 1014  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567899 tcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaagtgcttgttcaatgtctctccctccac 6567998  T
Q  1015 tcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgcaacaactactcttgctgaatatcac 1114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567999 tcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgcaacaactactcttgctgaatatcac 6568098  T
Q  1115 cactgacctctctg 1128  Q
    ||||||||||||||    
T  6568099 cactgacctctctg 6568112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 5574194 - 5574246
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  5574194 catcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccg 5574246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38594428 - 38594480
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  38594428 catcattaattgaatgtatctaaaaaatagatttttgcttatattagtgaccg 38594480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38598024 - 38598076
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  38598024 catcattaattgaatgtatctaaaaaatagatttttgcttatattagtgaccg 38598076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 34248499 - 34248550
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| ||| ||||||||| |||||||||||||    
T  34248499 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgacc 34248550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 38594399 - 38594348
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  38594399 atcattagttgaatgtatctaaagagtagatttttgcttatattagtgaccg 38594348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 38597995 - 38597944
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  38597995 atcattagttgaatgtatctaaagagtagatttttgcttatattagtgaccg 38597944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 1981068 - 1981122
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaa 70  Q
    ||||||||||| |||||||||||| |  |||||||||| ||||||||||||||||    
T  1981068 catcattaattgaatgtatctaaaaatgagatttttgcttatattagtgaccgaa 1981122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 20504299 - 20504242
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| ||| |||||||| ||||||||||||  |||||||||||||| ||||    
T  20504299 catcattaattgaatatatctaaaaagtagatttttgtttatattagtgaccggagga 20504242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25278230 - 25278177
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccga 69  Q
    ||||||||||||||||||||||||  ||| |||||||| ||||||| |||||||    
T  25278230 catcattaattaaatgtatctaaaaggtaaatttttgcttatattaatgaccga 25278177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 30902358 - 30902407
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    |||||||||| |||||||||||| |||| |||||||| ||||||||||||    
T  30902358 atcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgac 30902407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 3887888 - 3887840
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    |||||||||| |||||||||||| | ||||||||||| |||||||||||    
T  3887888 atcattaattgaatgtatctaaaaaatagatttttgcttatattagtga 3887840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 3887917 - 3887969
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||  ||||||||| ||||||||||||||    
T  3887917 catcattaattgaatgtatctaaaaagatgatttttgcttatattagtgaccg 3887969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 43426684 - 43426628
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagg 72  Q
    ||||||||||| ||||||| |||| ||| ||||||| | ||||||||||||||||||    
T  43426684 catcattaattgaatgtatttaaaaagtggatttttacttatattagtgaccgaagg 43426628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 34248471 - 34248421
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||    
T  34248471 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgac 34248421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 894 - 1128
Target Start/End: Complemental strand, 49290053 - 49289816
Alignment:
Q  894 ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg 990  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||  || ||||| ||   | | || || ||| |||   |||    
T  49290053 ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg 49289954  T
Q  991 cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca 1090  Q
    |||||||||| ||||||||||     ||||||||||||||||  ||| |||||||||| ||||||||||  || || || || ||||| |||| ||||||    
T  49289953 cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca 49289854  T
Q  1091 acaactactcttgctgaatatcaccactgacctctctg 1128  Q
    |||   ||||||||||||||||||||||| ||| ||||    
T  49289853 acatgaactcttgctgaatatcaccactggcctttctg 49289816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 894 - 1128
Target Start/End: Complemental strand, 49297004 - 49296767
Alignment:
Q  894 ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg 990  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||  || ||||| ||   | | || || ||| |||   |||    
T  49297004 ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg 49296905  T
Q  991 cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca 1090  Q
    |||||||||| ||||||||||     ||||||||||||||||  ||| |||||||||| ||||||||||  || || || || ||||| |||| ||||||    
T  49296904 cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca 49296805  T
Q  1091 acaactactcttgctgaatatcaccactgacctctctg 1128  Q
    |||   ||||||||||||||||||||||| ||| ||||    
T  49296804 acatgaactcttgctgaatatcaccactggcctttctg 49296767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 894 - 1128
Target Start/End: Complemental strand, 49303734 - 49303497
Alignment:
Q  894 ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg 990  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||  || ||||| ||   | | || || ||| |||   |||    
T  49303734 ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg 49303635  T
Q  991 cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca 1090  Q
    |||||||||| ||||||||||     ||||||||||||||||  ||| |||||||||| ||||||||||  || || || || ||||| |||| ||||||    
T  49303634 cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca 49303535  T
Q  1091 acaactactcttgctgaatatcaccactgacctctctg 1128  Q
    |||   ||||||||||||||||||||||| ||| ||||    
T  49303534 acatgaactcttgctgaatatcaccactggcctttctg 49303497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 13689592 - 13689540
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  13689592 catcattaattgaatgtatctaaaaaatagatttttgcttatattagtgaccg 13689540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 52817651 - 52817703
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  52817651 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 52817703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 55087795 - 55087847
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  55087795 catcattaattgaatgtatctaaaaattagatttttgcttatattagtgaccg 55087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 5418599 - 5418648
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    ||||||||||| |||||||||||| |||| |||||||| |||||||||||    
T  5418599 catcattaattcaatgtatctaaaaagtaaatttttgcttatattagtga 5418648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5418571 - 5418515
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagg 72  Q
    ||||||||||| |||||||||||| | | |||||||||  |||||||||||||||||    
T  5418571 catcattaattgaatgtatctaaaaaattgatttttgctcatattagtgaccgaagg 5418515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 24941167 - 24941116
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||||    
T  24941167 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgacc 24941116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 44156084 - 44156134
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||    
T  44156084 catcattaattcaatgtatctaaaaagtgaatttttgcttatattagtgac 44156134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 5e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 31008315 - 31008263
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  31008315 catcattaattaaatgtatctaaaaagtagatttttgcttatattagtgaccg 31008263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 4060255 - 4060307
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  4060255 catcattagttaaatgtatctaaaaagtagatttttgcttatattagtgaccg 4060307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 27206843 - 27206895
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  27206843 catcattaattgaatgtatctaaatagttgatttttgcttatattagtgaccg 27206895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 17490543 - 17490492
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  17490543 atcattaattaaatgtatctaaaaagtggatttttgcttatattagtgaccg 17490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 639855 - 639803
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  639855 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 639803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 6065517 - 6065465
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||||| |||||| ||||||||||||||    
T  6065517 catcattaattgaatgtatctaaaaagtagaattttgcttatattagtgaccg 6065465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 6065545 - 6065597
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  6065545 catcattaattgaatgtatctaaagagtggatttttgcttatattagtgaccg 6065597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 33604075 - 33604127
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  33604075 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 33604127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 37734857 - 37734909
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  37734857 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 37734909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 48022651 - 48022599
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  48022651 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 48022599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 2352979 - 2353028
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||||    
T  2352979 catcattaattaaatgtatctaaaaaataaatttttgcttatattagtga 2353028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8258027 - 8258079
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||||    
T  8258027 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccg 8258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 31008343 - 31008395
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||| ||||||    
T  31008343 catcattaattgaatgtatctaaaaagtggatttttgcttatattaatgaccg 31008395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 34658442 - 34658390
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||||||||||||| || |||  |||||||| ||||||||||||||    
T  34658442 catcattaattaaatgtatctgaaaagtgaatttttgcttatattagtgaccg 34658390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 2349840 - 2349897
Alignment:
Q  16 catcattaattaaatgtatctaaatag-tagatttttgcatatattagtgaccgaagg 72  Q
    ||||||||||| |||||||||||| |  ||||||||| | ||||||||||||||||||    
T  2349840 catcattaattgaatgtatctaaaaaaatagatttttacttatattagtgaccgaagg 2349897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 37734829 - 37734768
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgta 77  Q
    ||||||||||| ||||||||| || |||  |||||||| |||||||||||||| ||| ||||    
T  37734829 catcattaattgaatgtatcttaaaagtgaatttttgcttatattagtgaccggagggcgta 37734768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 40262552 - 40262602
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||    
T  40262552 catcattaattaaatgtatttaa--agtggatttttgcttatattagtgaccg 40262602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 25079263 - 25079206
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  25079263 catcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagga 25079206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38238868 - 38238920
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  38238868 catcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccg 38238920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 25079291 - 25079353
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtat 78  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||||||||| |||| ||||    
T  25079291 catcattaattgaatgtatctaaaaagtagatttttgtttatattagtgaccggaggatgtat 25079353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 4406473 - 4406422
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| |||  ||||||||||||||||||||||    
T  4406473 catcattaattgaatgtatctaaaaagtgaatttttgcatatattagtgacc 4406422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 34703527 - 34703579
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||||    
T  34703527 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccg 34703579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 40416990 - 40417042
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||||    
T  40416990 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccg 40417042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 45000685 - 45000741
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagg 72  Q
    |||||| |||| ||||| |||||| |||| |||||||| ||||||||||||||||||    
T  45000685 catcatcaattgaatgtgtctaaaaagtacatttttgcttatattagtgaccgaagg 45000741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 46944000 - 46943948
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||  ||||||||||||||    
T  46944000 catcattaattgaatgtatctaaaaagtggatttttgtttatattagtgaccg 46943948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 22106723 - 22106672
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| ||| |||||||| | ||||||||||| |||||||||||||    
T  22106723 catcattaattgaatatatctaaaaaatagatttttgcttatattagtgacc 22106672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 641 - 676
Target Start/End: Complemental strand, 28835258 - 28835223
Alignment:
Q  641 cgattcgtccttaacttgagctcatcaaacacttga 676  Q
    |||||||||||||||||||||||||||| |||||||    
T  28835258 cgattcgtccttaacttgagctcatcaaccacttga 28835223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 40529628 - 40529679
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| ||| |||||||| | ||||||||||| |||||||||||||    
T  40529628 catcattaattgaatatatctaaaaaatagatttttgcttatattagtgacc 40529679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38238840 - 38238787
Alignment:
Q  16 catcattaattaaatgtatctaaatagt-agatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| | |||||||| ||||||||||||||    
T  38238840 catcattaattgaatgtatctaaaaagtgaaatttttgcttatattagtgaccg 38238787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 17773585 - 17773637
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  17773585 catcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccg 17773637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 21506519 - 21506467
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  21506519 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 21506467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 21998123 - 21998175
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||| |||||||    
T  21998123 catcattaattgaatgtatctaaaaagtagatttttgcttatattggtgaccg 21998175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 31536367 - 31536315
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||    
T  31536367 catcattaaataaatgtatctaaaaagttgatttttgcttatattagtgaccg 31536315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 17268069 - 17268019
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||||||||||| |||| | ||||||||| | ||||||||||||    
T  17268069 catcattaattaaatgtatttaaaaaatagatttttacttatattagtgac 17268019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 30460697 - 30460747
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||| ||| |||||||| |||| |||||||| ||||||||||||    
T  30460697 catcattaattgaatctatctaaaaagtaaatttttgcttatattagtgac 30460747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 52168339 - 52168287
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  52168339 catcattaattaaatgtatctaaaaagtaaatttttgcttatattagtgaccg 52168287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 29565165 - 29565113
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| | | ||||||||| ||||||||||||||    
T  29565165 catcattaattaaatgtatctaaaaaattgatttttgcttatattagtgaccg 29565113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 36362660 - 36362608
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  36362660 catcattaattaaatgtatttaaagagttgatttttgcttatattagtgaccg 36362608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38455249 - 38455301
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| |||| |||||||  ||||||||||||||    
T  38455249 catcattaattaaatgtatctaaaaagtaaatttttgtttatattagtgaccg 38455301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 51239327 - 51239379
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  51239327 catcattaattgaatgtatctaaaaaatagatttttgcttatattagtgaccg 51239379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 42449161 - 42449110
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| ||| ||||||||| |||||||||||||    
T  42449161 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgacc 42449110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 51239298 - 51239247
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  51239298 atcattagttgaatgtatctaaagagtagatttttgcttatattagtgaccg 51239247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 33412549 - 33412599
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||    
T  33412549 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgac 33412599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36362688 - 36362738
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgac 66  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||| ||||    
T  36362688 catcattaattgaatgtatctaaaaagtagatttttgcttatattaatgac 36362738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 50260989 - 50260924
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtatgca 81  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||| |||| |||  |||||||    
T  50260989 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtaaccggagggtgtatgca 50260924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 29720160 - 29720212
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||||||||||| |||| |||  |||||||| ||||||||||||||    
T  29720160 catcattaattaaatgtatttaaaaagtgaatttttgcttatattagtgaccg 29720212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 51617387 - 51617335
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||  ||||||||||||||    
T  51617387 catcattaattgaatgtatctaaaaagtggatttttggttatattagtgaccg 51617335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 52931757 - 52931809
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||| | ||||| ||||||||    
T  52931757 catcattaattgaatgtatctaaaaagtagatttttacttatatcagtgaccg 52931809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 12568514 - 12568452
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtat 78  Q
    |||| ||| |||||||||| |||| ||||||||||||  |||||||||||||| |||| ||||    
T  12568514 catctttagttaaatgtatttaaaaagtagatttttgtttatattagtgaccggaggatgtat 12568452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 13544978 - 13544916
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtat 78  Q
    |||| ||| |||||||||| |||| ||||||||||||  |||||||||||||| |||| ||||    
T  13544978 catctttagttaaatgtatttaaaaagtagatttttgtttatattagtgaccggaggatgtat 13544916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 22173851 - 22173806
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatatta 61  Q
    ||||||||||| ||||||||||||  |||||||||||| |||||||    
T  22173851 catcattaattgaatgtatctaaaatgtagatttttgcttatatta 22173806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 51617418 - 51617467
Alignment:
Q  19 cattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||| |||||||||||| ||| || |||||| ||||||||||||||    
T  51617418 cattaattgaatgtatctaaaaagtggaattttgcttatattagtgaccg 51617467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 52315474 - 52315523
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    ||||||||||| |||||||||||| ||| ||||||||| |||| ||||||    
T  52315474 catcattaattgaatgtatctaaaaagtggatttttgcttatactagtga 52315523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 40098815 - 40098764
Alignment:
Q  17 atcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  40098815 atcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccg 40098764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 1739649 - 1739701
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  1739649 catcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccg 1739701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 9056105 - 9056157
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| |||  |||||||| ||||||||||||||    
T  9056105 catcattaattaaatgtatctaaaaagtgaatttttgcttatattagtgaccg 9056157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 14381294 - 14381242
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  14381294 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 14381242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 40098844 - 40098896
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  40098844 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 40098896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14381322 - 14381379
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| |||||||||||| ||| ||||||||  |||||||||||||| ||||    
T  14381322 catcattaattgaatgtatctaaaaagtggatttttgtttatattagtgaccggagga 14381379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 26014625 - 26014574
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||||    
T  26014625 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgacc 26014574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 13211323 - 13211380
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| |||||||||||| | ||||||||| | ||||||| |||||| ||||    
T  13211323 catcattaattgaatgtatctaaaaaatagatttttacttatattaatgaccggagga 13211380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 54444 - 54392
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||    
T  54444 catcattaattgaatgtatctaaaaagtagatttttgcttatattagtaaccg 54392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 54472 - 54521
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||    
T  54472 catcattaattgaatgtatctaaagagtgaatttttgcttatattagtga 54521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 120229 - 120281
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  120229 catcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccg 120281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 23914897 - 23914845
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  23914897 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccg 23914845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 26300167 - 26300115
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  26300167 catcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccg 26300115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 43446915 - 43446863
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||| ||||    
T  43446915 catcattaattaaatgtatctaaaaagtaaatttttgcttatattagtaaccg 43446863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 37944686 - 37944740
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaa 70  Q
    ||||||||||| |||||||||||| | || |||||||| ||||||||||||||||    
T  37944686 catcattaattgaatgtatctaaaaaataaatttttgcttatattagtgaccgaa 37944740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 3851419 - 3851370
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    ||||||||||| |||||||||||| ||| ||||||||| |||||||||||    
T  3851419 catcattaattgaatgtatctaaaaagtggatttttgcttatattagtga 3851370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 11262384 - 11262331
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccga 69  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||||||    
T  11262384 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccga 11262331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 37944658 - 37944601
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||||| ||||    
T  37944658 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagga 37944601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 3851447 - 3851499
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||||||||||||||| | |  |||||||| ||||||||||||||    
T  3851447 catcattaattaaatgtatctaaaaaatgaatttttgcttatattagtgaccg 3851499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 13311230 - 13311179
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||||| |||||| ||||||||||||||    
T  13311230 catcattaattgaatgtatctaaa-agtagacttttgcttatattagtgaccg 13311179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 13311258 - 13311314
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagg 72  Q
    ||||||||||| ||||||||||||   ||||||||| | ||||||||||||||||||    
T  13311258 catcattaattgaatgtatctaaaagatagatttttacttatattagtgaccgaagg 13311314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 35969185 - 35969121
Alignment:
Q  16 catcattaatta-aatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtatg 79  Q
    |||||||||||  |||||||||||| ||| ||||||||| |||||||||||||| |||| |||||    
T  35969185 catcattaatttgaatgtatctaaaaagtggatttttgcttatattagtgaccggaggatgtatg 35969121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 42013878 - 42013826
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    ||||||||||| |||||||||||| |||  |||||||| ||||||||||||||    
T  42013878 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccg 42013826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 13157389 - 13157326
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaaggacgtatg 79  Q
    ||||||||||| ||| |||||||| ||| ||||||||| ||||||| |||||| |||| |||||    
T  13157389 catcattaattgaatatatctaaaaagtggatttttgcttatattaatgaccggaggatgtatg 13157326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 9707133 - 9707179
Alignment:
Q  26 taaatgtatctaaatagtagatttttgcatatattagtgaccgaagg 72  Q
    |||||| | ||||||||||||||||||| |||| |||||||||||||    
T  9707133 taaatgaacctaaatagtagatttttgcttataatagtgaccgaagg 9707179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 19531385 - 19531434
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||||||||    
T  19531385 catcattaattgaatgtatctaaaaagtgaatttttgcttatattagtga 19531434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 37870100 - 37870153
Alignment:
Q  15 tcatcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccg 68  Q
    |||||||||||| ||| |||||||| |  |||||||||| ||||||||||||||    
T  37870100 tcatcattaattgaatatatctaaaaatgagatttttgcttatattagtgaccg 37870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 38835581 - 38835532
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtga 65  Q
    |||||||||||||||||||||||| | |  |||||||| |||||||||||    
T  38835581 catcattaattaaatgtatctaaaaaatgaatttttgcttatattagtga 38835532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 42013906 - 42013963
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgaccgaagga 73  Q
    ||||||||||| |||||||||||| |||  |||||||| |||||| ||||||| ||||    
T  42013906 catcattaattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccggagga 42013963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 246851 - 246800
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| |||| |||||||| |||||||||||||    
T  246851 catcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgacc 246800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 246879 - 246930
Alignment:
Q  16 catcattaattaaatgtatctaaatagtagatttttgcatatattagtgacc 67  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||| |||||    
T  246879 catcattaattgaatgtatctaaaaagtagatttttgcttatattaatgacc 246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University