View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_10 (Length: 584)
Name: NF20775_low_10
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_10 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 584
Target Start/End: Complemental strand, 115451 - 114871
Alignment:
| Q |
12 |
aagaagagatagtgtatagaatctgaaagggtatcgtatacactatactagaaaatatcatagtcagtggggactagactagcaaaattagggtaaacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115451 |
aagaagagatagtgtatagaatctgaaagggtatcgtatacactatactagaaaatctcatagtcagtggggactagactagcaaaattagggtaaacta |
115352 |
T |
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| Q |
112 |
gtataacttctttacgccgtcttctctatctagtaactccttcatttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaatatttt |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115351 |
gtataacttctttacgccgtcttgtctatctagtaactccttcatttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaatatttt |
115252 |
T |
|
| Q |
212 |
gatacatacttca--------ttcatcagataagaacatcttctcaaggttgagaaagagcaaaaatttcaaagattcacaattcaaaccccttttgtca |
303 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115251 |
gatacatacttcagaattcagatcatcagataagaacatcttctcaaggttgagaaagagcaaaaatttcaaagattcacaattcaaaccccttttgtca |
115152 |
T |
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| Q |
304 |
gggttttgtaccgtttatagtttc-ttttttcatatttaggtatagttctatattttgccataaaagaaaaattagctcacnnnnnnntttcaaatcacc |
402 |
Q |
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|||||| ||||||||||| ||||| |||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
115151 |
gggtttagtaccgtttattgtttctttttttgatatttaggtatagtgctattttttgccattaaagaaaaattagctcacaaaaaaatttcaaatcacc |
115052 |
T |
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| Q |
403 |
cttgcatcgaaccaccatatgatctagtannnnnnnnnnnnnnnnnnnaataaatgatctagtaatgttttgtagtttagatattataaaaacataatag |
502 |
Q |
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| T |
115051 |
cttgcatcgaaccaccatatgatctagta-ttgtttttttttttttttaataaatgatctagtaatgttttgtagtttagatattataaaaacataatag |
114953 |
T |
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| Q |
503 |
aacgtgatggcatccaatcctttgattatccttctaataatttaaatatgatgttatcttatcttaaaaatactcaaaccat |
584 |
Q |
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| T |
114952 |
aacgtgatggcatccaatcctttgattatccttctaataatttaaatatgatgttattttatcttaaaaatactcaaaccat |
114871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 23948005 - 23947899
Alignment:
| Q |
169 |
aagcaagaacaataatccaatttcttattgtatcaaat--attttgatacatacttcat-tcatcagataagaacatcttctcaaggttgagaaagagca |
265 |
Q |
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||||||| |||| ||||||||| || ||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||| |
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| T |
23948005 |
aagcaagttcaatcatccaatttgttcttgtatcaaattcattttgatacatacttcatgtcatcagttctgaacatcttctcaaggttgagaagcagcc |
23947906 |
T |
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| Q |
266 |
aaaattt |
272 |
Q |
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||||||| |
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| T |
23947905 |
aaaattt |
23947899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 18603255 - 18603127
Alignment:
| Q |
97 |
aattagggtaaactagtataacttcttt-acgccgtcttctctatctagtaactccttcatttaatagttgagaagcaagaacaataatccaatttctta |
195 |
Q |
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|||||| ||||| ||| ||||||||||| | | | |||||| |||| |||||| || |||| |||||| ||||||||| | ||| ||| ||| | ||| |
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| T |
18603255 |
aattagcgtaaaataggataacttcttttatgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatctttta |
18603156 |
T |
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| Q |
196 |
ttgtatcaaat--attttgatacatactt |
222 |
Q |
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| T |
18603155 |
ttgtatcaaattcattttgatacatactt |
18603127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 33699684 - 33699582
Alignment:
| Q |
155 |
atttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaa--tattttgatacatacttca-ttcatcagataagaacatcttctcaag |
251 |
Q |
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|||| |||||| |||||||| ||| ||| ||||| |||| |||||||||| |||||||||||| |||||| |||||| || ||||||||||||||| |
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| T |
33699684 |
atttgatagttcagaagcaaacacattaaaccaatctcttcttgtatcaaatttattttgatacaaacttcagatcatcatatctgaacatcttctcaag |
33699585 |
T |
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| Q |
252 |
gtt |
254 |
Q |
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||| |
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| T |
33699584 |
gtt |
33699582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 26407651 - 26407712
Alignment:
| Q |
62 |
gaaaatatcatagtcagtggggactagactagcaaaattagggtaaactagtataacttctt |
123 |
Q |
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| T |
26407651 |
gaaaatattgtagttagtggggactggactagcccaattagggtgaacgagtataacttctt |
26407712 |
T |
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