View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_15 (Length: 464)
Name: NF20775_low_15
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_15 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 2332181 - 2332617
Alignment:
| Q |
11 |
catcatcagaagacgacgaaataaaatttctggtttgaatgtggaaaacatatggtgcacgaatgcaagcactctcaaaagggaagcctcaaagtttttt |
110 |
Q |
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| T |
2332181 |
catcatcagaagacggcgaaataaaatttctggtttgaatgtggaaaacat--ggtgcacgaatgcaagcactctcaaaagggaagcctcaaagtttttt |
2332278 |
T |
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| Q |
111 |
atgaatctattccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttagcattaacttgatggaccagcttctc |
210 |
Q |
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| T |
2332279 |
atgcatctatcccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttggcattagcttgatggaccagcttctc |
2332378 |
T |
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| Q |
211 |
ttgcctgtaactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaattt |
310 |
Q |
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| T |
2332379 |
ttgcctgtcactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaattt |
2332478 |
T |
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| Q |
311 |
gttggcatattgttgggcatgatgtatgggaaatggtgtctgcctgtttggtgctttttcttccggcgttattgatcatactcttgtagagaccttggtt |
410 |
Q |
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| T |
2332479 |
gttggcatattgttgggcatgatgtatgggaaatggtgtctgcctgtttggtgctttttcttccggcgttattgatcatactcttgtagagaccttggtt |
2332578 |
T |
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| Q |
411 |
gttctcatcccgaaaattgatatcgccaagagtttcaaa |
449 |
Q |
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| T |
2332579 |
gttctcatcctgaaaattgatattgccaagagtttcaaa |
2332617 |
T |
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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 1261909 - 1261795
Alignment:
| Q |
235 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattgttgggcatgatg |
334 |
Q |
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| T |
1261909 |
aaagatgctattttctcaatgcactcttacaaagccccgggtccagatggttttcaacctatttttttcaaaacttattggcatattgttggggatgatg |
1261810 |
T |
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| Q |
335 |
tatgggaaatggtgt |
349 |
Q |
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| T |
1261809 |
tgtggaaaatggtgt |
1261795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 16604 - 16490
Alignment:
| Q |
235 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattgttgggcatgatg |
334 |
Q |
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| T |
16604 |
aaagatgctattttctcaatgcacttttacaaagccccgggtccagatggttttcaacctatttttttcaaagcttattggcatagtgttggggatgatg |
16505 |
T |
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| Q |
335 |
tatgggaaatggtgt |
349 |
Q |
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| T |
16504 |
tctggaaaatggtgt |
16490 |
T |
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