View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20775_low_16 (Length: 459)
Name: NF20775_low_16
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_16 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 11118508 - 11118974
Alignment:
| Q |
1 |
aacttaaatcttcctttgctgctcaaggtctcaacacggttgatctagtagcactctcaggtatggaaatacatgcaccatttccta--------taata |
92 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
11118508 |
aacttaaatcttcctttgctgctcaaggactcaacacggttgatctagtagcactctcaggtatgcaaatacatgcaccatttcctaaataataataata |
11118607 |
T |
|
| Q |
93 |
atat----------caaacgatgatatttagataagatgatatgagtctccttaatttttaatttgaatttaatcatgaaccatagtgatattaaaattt |
182 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11118608 |
atataattttctatcaaaccatgatatttagataagatgatatgagcctccttaattttaaatttgaatttaatcatgtaccatagtgatattaaaattt |
11118707 |
T |
|
| Q |
183 |
aaactattgaggagagttgtcgcgactttagatttcacatgactcggat--------nnnnnnnnnnggacaaactgcatccattaacaatcaaataagn |
274 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
11118708 |
a------------------tcgcgactttagatttcacatgactcggataaaaaaaaaaaaaaaaaaggacaaactgcatccattaacactcaaataagt |
11118789 |
T |
|
| Q |
275 |
nnnnnnaaaagtaattaaattttgatgaggaattgtttgaactaggattcaaactcgaattcttccgnnnnnnntgtgtatcttactagatcttattaat |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11118790 |
atttttaaaagtaattaaatcttgatgaggaattgtttgaactaggattcaaactcgaattcttccaaaaaaaatgtgtatcttactagatcttattaat |
11118889 |
T |
|
| Q |
375 |
ccctagagctatatagcacatgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacattaggaagagca |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11118890 |
ccctagagctatatagcacatgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacattaggaagagca |
11118974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10793767 - 10793704
Alignment:
| Q |
1 |
aacttaaatcttcctttgctgctcaaggtctcaacacggttgatctagtagcactctcaggtat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10793767 |
aacttaaatcttcctttgctgctcaaggtctcaacacggttgatctagtagcactctcaggtat |
10793704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 11110559 - 11110640
Alignment:
| Q |
2 |
acttaaatcttcctttgctgctcaaggtctcaacacggttgatctagtagcactctcaggtatggaaatacatgcaccattt |
83 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11110559 |
acttaaatctgcctttgctgctcaaggacttaacacggttgacctagtagcactctcaggtatatatatacatgcaccattt |
11110640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University