View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_17 (Length: 458)

Name: NF20775_low_17
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_17
NF20775_low_17
[»] chr6 (6 HSPs)
chr6 (16-445)||(7971310-7971739)
chr6 (16-231)||(8041949-8042164)
chr6 (232-450)||(8042188-8042408)
chr6 (25-231)||(8032079-8032284)
chr6 (309-450)||(8032363-8032504)
chr6 (394-450)||(7978238-7978294)
[»] scaffold0531 (2 HSPs)
scaffold0531 (25-231)||(3047-3253)
scaffold0531 (309-449)||(2604-2744)
[»] chr2 (2 HSPs)
chr2 (16-165)||(41381989-41382138)
chr2 (304-449)||(41381743-41381888)
[»] chr7 (1 HSPs)
chr7 (45-146)||(14198574-14198675)


Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 7971739 - 7971310
Alignment:
Q  16 caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctac 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7971739 caaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctac 7971640  T
Q  116 caaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971639 caaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaa 7971540  T
Q  216 atttgtattctggatttcattttattttcatcactctttataagtaacttgtggattgaaacaagctaatttaaatcttttatgtttgtgtttcagttac 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7971539 atttgtattttggatttcattttattttcatcactctttataagtaacttgtggaatgaaacaagctaatttaaatcttttatgtttgtgtttcagttac 7971440  T
Q  316 tctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttct 415  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7971439 tctacaattgcttgggctggtagtatacacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttaatttct 7971340  T
Q  416 ttaatgcactcggcgctgttgcatttgcct 445  Q
    |||||||||| ||| |||||||||||||||    
T  7971339 ttaatgcacttggctctgttgcatttgcct 7971310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 8041949 - 8042164
Alignment:
Q  16 caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctac 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8041949 caaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctac 8042048  T
Q  116 caaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8042049 caaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaa 8042148  T
Q  216 atttgtattctggatt 231  Q
    ||||||||| ||||||    
T  8042149 atttgtattttggatt 8042164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 232 - 450
Target Start/End: Original strand, 8042188 - 8042408
Alignment:
Q  232 tcattttattttcatcactctttataagtaacttgtggatt--gaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttg 329  Q
    |||||||||||||| ||||| |||||   |||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8042188 tcattttattttcaccactcattatatccaacttgtggaatatgaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttg 8042287  T
Q  330 ggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggc 429  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  8042288 ggctggtagtatacacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttttatttctttaatgcacttggc 8042387  T
Q  430 gctgttgcatttgcctatgct 450  Q
     ||||||||||||||| ||||    
T  8042388 tctgttgcatttgcctttgct 8042408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 8032079 - 8032284
Alignment:
Q  25 cacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttga 124  Q
    ||||||||||||||| |||||||||||   |||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  8032079 cacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttga 8032178  T
Q  125 actccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaaatttgtatt 224  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  8032179 actccatttccggtgtatccttggttgcagcagtcatgtccatttggtatatcgacatctttctattctctatattac-ttttaggctcaaatatgtatt 8032277  T
Q  225 ctggatt 231  Q
     ||||||    
T  8032278 ttggatt 8032284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 309 - 450
Target Start/End: Original strand, 8032363 - 8032504
Alignment:
Q  309 cagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt 408  Q
    |||||| ||||||||||||||| ||  |||| | ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  8032363 cagttattctacaattgcttggactactagtgtacacaagggagtacaagaaaatgtacaatatagtagcaaggctacaaatactgcagaatcagtcttt 8032462  T
Q  409 gatttctttaatgcactcggcgctgttgcatttgcctatgct 450  Q
     |||||||||||||||||||| ||||||||||||||||||||    
T  8032463 aatttctttaatgcactcggctctgttgcatttgcctatgct 8032504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 7978294 - 7978238
Alignment:
Q  394 gcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctatgct 450  Q
    |||||| | |||||||| |||||||||||||| ||| || |||| ||||||||||||    
T  7978294 gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgct 7978238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 3253 - 3047
Alignment:
Q  25 cacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttga 124  Q
    |||||||||||||||||||||||||||   ||||||||||  | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  3253 cacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttga 3154  T
Q  125 actccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctatattactttttaggctcaaatttgtatt 224  Q
    |||||||||| |||||||||||||||||||| || ||||||||  |||||||| || ||| | | ||||||||| |||||||||| ||||||| ||||||    
T  3153 actccatttctggtgtatctttggtggcagcagtcatgtccatttggtatatctacttctatctgttctctatagtactttttagactcaaatatgtatt 3054  T
Q  225 ctggatt 231  Q
     ||||||    
T  3053 ttggatt 3047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 449
Target Start/End: Complemental strand, 2744 - 2604
Alignment:
Q  309 cagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt 408  Q
    |||||||||||| ||||||||| |||   ||   |||||||||||| |||||||||||||||||||||| || ||||| ||  | |||| ||| ||||||    
T  2744 cagttactctactattgcttggactgccggtgcacacaagggagtaatagaaaatgtacaatatagtagaaacgctacgacggccgcagaatcagtcttt 2645  T
Q  409 gatttctttaatgcactcggcgctgttgcatttgcctatgc 449  Q
     |||||||||||||||| ||| || | || |||||||||||    
T  2644 aatttctttaatgcacttggctctatcgcgtttgcctatgc 2604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 41382138 - 41381989
Alignment:
Q  16 caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctac 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  41382138 caaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctac 41382039  T
Q  116 caaacttgaactccatttccggtgtatctttggtggcagccgttatgtcc 165  Q
    | ||| | |||||| ||||  |||||||||| || ||||| |||||||||    
T  41382038 ccaacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc 41381989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 304 - 449
Target Start/End: Complemental strand, 41381888 - 41381743
Alignment:
Q  304 tgtttcagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctg 403  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||| || |||||||||||||| ||||||||| || |||| |||||||||||    
T  41381888 tgtttcagttactctgcaattgcttgggttggtagtgtacacaagggagtacaagcaaatgtacaatatactagcaaagccacgactagtgcaggatctg 41381789  T
Q  404 tctttgatttctttaatgcactcggcgctgttgcatttgcctatgc 449  Q
    ||||| |||||||||||||||| ||  ||||||| |||||||||||    
T  41381788 tctttaatttctttaatgcacttggttctgttgcttttgcctatgc 41381743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 14198675 - 14198574
Alignment:
Q  45 ttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatct 144  Q
    |||||||  |||||||||||  | ||| || ||||| |||||||||| ||||||||| |||||||| || || ||||||||||| ||||| ||||| |||    
T  14198675 ttgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctggtgtctct 14198576  T
Q  145 tt 146  Q
    ||    
T  14198575 tt 14198574  T

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