View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20775_low_18 (Length: 454)
Name: NF20775_low_18
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Original strand, 36299370 - 36299793
Alignment:
| Q |
8 |
ataattcttattggttccgaattctgaataaagatgaatatggttgattcacataggaattaatagaagaactaggtatatattttgtgcaatatgactg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36299370 |
ataattcttattggttccgaattctgaataaagatgaatatggttgattcacataggaattaatagaagaactaggtatatattttgtgcaatatgactg |
36299469 |
T |
|
| Q |
108 |
agctggatatggagaaagtgttacaaaccccaagcgttcagatatgcggtcaccacggttggttcactactgatatgcggtcatccactagctactattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36299470 |
agctggatatggagaaagtgttacaaactccaagcgttcagatatgcggtcaccacggttggatcactactgatatgcggtcatccactagctactattt |
36299569 |
T |
|
| Q |
208 |
gtagcttgaccaaatttacatccgaaaccaccttgcaatgcacgaaagaaaattaaaacgaatatccaaataagtggttaaaaattaatattaggacatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36299570 |
gtagcttgaccaaatttacatccgaaaccaccttgcaatgcacgaaagaaaattaaaacgaatatccaaataagtggttaaaaattaatattaggacatg |
36299669 |
T |
|
| Q |
308 |
atatgaccatatgaaatctgattagacatcttagtatttttacattgttagtatattgtaattaatttctaatgtaaatataattctactaaccgtgata |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36299670 |
atacgaccatatgaaatctgattagacatcttagtatttttacattgttagtatattgtaattaatttctaatgtaaatataattctactaaccgtgata |
36299769 |
T |
|
| Q |
408 |
tgttctgacttgtagaacaagtta |
431 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36299770 |
tgttctgacttgtagaacaagtta |
36299793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 36301284 - 36301364
Alignment:
| Q |
355 |
ttagtatattgtaattaatttctaatgtaaatataattctactaaccgtgatatgttctgacttgtagaacaagttaaggg |
435 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
36301284 |
ttagtatgttgtaattaatttctaatgtaaatataattctactaaccatgatatgttccgacttgtagaacaagttaaggg |
36301364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 36296036 - 36296113
Alignment:
| Q |
45 |
atatggttgattcacataggaattaatagaagaactaggtatatattttgtgcaatatgactgagctggatatggaga |
122 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||| |||| || ||| || | |||||||| | |||||||||||||| |
|
|
| T |
36296036 |
atatgattgattcacataggaattgatagatgaattaggaatttatcttctacaatatgatcgtgctggatatggaga |
36296113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 177 - 435
Target Start/End: Complemental strand, 48299605 - 48299346
Alignment:
| Q |
177 |
ctgatatgcggtcatccactagctactatttgtagcttgaccaaatttacatccgaaaccaccttgcaatgcacgaaagaaaattaaaacgaatatccaa |
276 |
Q |
| |
|
||||| ||||| ||||| | |||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||| ||||| || |
|
|
| T |
48299605 |
ctgatgtgcggacatccgcaagctactatttgtagcttgaccaagttcacatccgaaaccaccttgtgatgcaagaaagaaaattcaaacaaatatataa |
48299506 |
T |
|
| Q |
277 |
ataagtggttaaaaattaatattaggacatgatatgaccatatgaaatctgattagacatcttagtatttttacattgttagtatattgtaattaatttc |
376 |
Q |
| |
|
| ||||| |||||| | ||||||||||||||||| ||||||| | ||||||||| |||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
48299505 |
acaagtgcttaaaattcaatattaggacatgatactaccatattatatctgattaaacatctctgtatttttacatagttagtatattacaattaatttc |
48299406 |
T |
|
| Q |
377 |
taatg-taaatataattctactaaccgtgatatgttctgacttgtagaacaagttaaggg |
435 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||| | |||| ||| |||||||||||| |
|
|
| T |
48299405 |
tgatgttaaatataattctactaaccatgatatgtacctacttataggacaagttaaggg |
48299346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 48300359 - 48300227
Alignment:
| Q |
15 |
ttattggttccgaattctgaataaagatgaatatggttgattcacataggaattaatagaagaactaggtatatattttgtgcaatatgactgagctgga |
114 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
48300359 |
ttattggttctgacttctgaataaacatgaatatggttcattcacatagggattaatagaagaactgggtatatattttgtgcaatatgaccgagctgga |
48300260 |
T |
|
| Q |
115 |
tatggagaaagtgttacaaaccccaagcgttca |
147 |
Q |
| |
|
| |||||||||| | ||||||| || |||||| |
|
|
| T |
48300259 |
tgcggagaaagtgatccaaacccgaaacgttca |
48300227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University