View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_19 (Length: 452)

Name: NF20775_low_19
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_19
NF20775_low_19
[»] chr3 (5 HSPs)
chr3 (18-442)||(20704796-20705219)
chr3 (162-281)||(31219196-31219313)
chr3 (212-268)||(22318226-22318281)
chr3 (193-230)||(32998826-32998863)
chr3 (146-238)||(42110915-42111007)
[»] chr8 (5 HSPs)
chr8 (178-268)||(37325123-37325212)
chr8 (162-297)||(4656543-4656678)
chr8 (186-276)||(40899657-40899747)
chr8 (194-275)||(7632687-7632768)
chr8 (169-273)||(39555893-39555995)
[»] chr6 (6 HSPs)
chr6 (169-256)||(30525794-30525881)
chr6 (148-276)||(29389113-29389241)
chr6 (162-213)||(33013186-33013237)
chr6 (180-276)||(9929327-9929422)
chr6 (146-275)||(29263761-29263890)
chr6 (211-275)||(2513122-2513185)
[»] chr7 (5 HSPs)
chr7 (158-264)||(35424844-35424949)
chr7 (194-275)||(4451853-4451933)
chr7 (181-295)||(20953201-20953315)
chr7 (169-238)||(40172473-40172542)
chr7 (169-297)||(17115894-17116022)
[»] chr2 (5 HSPs)
chr2 (194-297)||(24510906-24511008)
chr2 (195-275)||(23046575-23046654)
chr2 (180-275)||(43050146-43050240)
chr2 (169-219)||(19943459-19943509)
chr2 (180-233)||(44647174-44647227)
[»] chr4 (4 HSPs)
chr4 (193-264)||(45195753-45195823)
chr4 (193-299)||(12311811-12311917)
chr4 (252-295)||(29491946-29491989)
chr4 (193-264)||(41945210-41945279)
[»] chr1 (1 HSPs)
chr1 (193-297)||(32556493-32556596)
[»] chr5 (5 HSPs)
chr5 (139-206)||(6362791-6362858)
chr5 (193-255)||(40491728-40491790)
chr5 (193-278)||(7599433-7599518)
chr5 (169-266)||(22017651-22017748)
chr5 (212-296)||(18401224-18401308)
[»] scaffold0110 (1 HSPs)
scaffold0110 (193-255)||(6459-6521)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 20705219 - 20704796
Alignment:
Q  18 gtacttatatcatgcgtagactaatttcattgatatgttttatcaatgaaccaataattcaaacagaaaagcaacgttatcttannnnnnnnctgaatta 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  20705219 gtacttatatcatgcgaagactaatttcattgatatgttttatcaatgaaccaataattcaaacagaaaagcaacgttatcttatttattt-ctgaatta 20705121  T
Q  118 ttttgtcatttcatattggatttagaccgtttcttttcc-tatcttatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataa 216  Q
    ||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  || |    
T  20705120 ttttgtcatttcaaattggagttagaccgttttttttccctatcttatgaacttctcgcatgtcctatgcagtttagattatagaatccaaacggtatca 20705021  T
Q  217 acatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttataggtgnnnnnnngtaacaccct 316  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||    
T  20705020 acatctcataaaaacctccaaaaatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatagg-gtgaaaaagtaacaccct 20704922  T
Q  317 tggtgttaatgcatggcaaccaacataggcaactgagggcccaaaattttgcttgcagttcctgaaaaccagggccggttcaaccgcaaggttagacaag 416  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  20704921 tggtgttaatgcatggcaaccaacataggcaaatgagggcccaaaattttgcttgcagttcctggaaaccagggccggttgaaccgcaaggttagacaag 20704822  T
Q  417 ccatatttactcctatatgtcctatg 442  Q
    ||||||||||||||||||||| ||||    
T  20704821 ccatatttactcctatatgtcgtatg 20704796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 31219313 - 31219196
Alignment:
Q  162 tatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatt 261  Q
    ||||||||||| || ||||||||||| || |||||||| ||||| |||| |||||||  | ||| |||||||||||| | ||| | |||||||||| |||    
T  31219313 tatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaactccccat-aaaacctccaaa-acatgctgaaacatttcagatt 31219216  T
Q  262 ttaaaatctgaatagaatgc 281  Q
    ||||||| ||||||| ||||    
T  31219215 ttaaaatttgaataggatgc 31219196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 22318281 - 22318226
Alignment:
Q  212 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 268  Q
    |||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||    
T  22318281 cataaacatctcataaaaaccttcaaa-acatgttaaaacatttcatattttaaaat 22318226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 32998863 - 32998826
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaa 230  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  32998863 gattatgaaatccaaacgacataaacacctcataaaaa 32998826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 42110915 - 42111007
Alignment:
Q  146 gtttcttttcctatcttatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaa 238  Q
    ||||||||| | |||||| ||  |||||||  | ||||||||  || ||||||| ||| | ||||||||||||| | ||||||||||||||||    
T  42110915 gtttctttttccatcttacgagtttctcgcgcgccctatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaa 42111007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 37325212 - 37325123
Alignment:
Q  178 gtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 268  Q
    |||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||||||||| | | ||||||||||||| |||||||||||    
T  37325212 gtcctatgcaatttagattatagaattcaaatgacataaacatcccattaaaacctccaaa-acacgttaaaacatttcgaattttaaaat 37325123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 4656543 - 4656678
Alignment:
Q  162 tatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatt 261  Q
    ||||| |||||||||  | ||||||| ||| ||||||| ||||| ||||||||||| |  ||||||||||||  ||| | |  ||||||||||||| |||    
T  4656543 tatgagcttctcgcacattctatgcagtttggattatagaatccgaacgacataaatacatcataaaaacctttaaaaacacattaaaacatttcagatt 4656642  T
Q  262 ttaaaatctgaatagaatgcgcgaaaaacttatagg 297  Q
     ||||||||| |||  ||||  ||||||||||||||    
T  4656643 ctaaaatctggataagatgcaagaaaaacttatagg 4656678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 40899747 - 40899657
Alignment:
Q  186 caatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatag 276  Q
    ||||| |||||||||||| | || | |||||||| | ||||||||||| |||| | | ||||||| |||||| ||||||||||||||||||    
T  40899747 caattcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatag 40899657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 7632768 - 7632687
Alignment:
Q  194 attataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 275  Q
    |||||| ||||  ||||||||||||| |  |||||||||| |||| ||| ||| ||| ||||||||||||||||| ||||||    
T  7632768 attatagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata 7632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 39555995 - 39555893
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 268  Q
    ||||||| ||||||||||| |||  |||||| ||||||| | ||||||||| |  ||||||| ||| ||| | | ||| |||||||||| ||||||||||    
T  39555995 ttctcgcgtgtcctatgcagtttgaattatataatccaa-caacataaacaccctataaaaatctcaaaa-acacgttgaaacatttcagattttaaaat 39555898  T
Q  269 ctgaa 273  Q
    |||||    
T  39555897 ctgaa 39555893  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 30525794 - 30525881
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttc 256  Q
    |||||||| | |||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||| | | ||| |||||||||    
T  30525794 ttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttc 30525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 29389113 - 29389241
Alignment:
Q  148 ttcttttcctatcttatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgtta 247  Q
    ||||||||| | | |||||  |||||||| ||||||| || ||  ||||||||||||| |||  |||||||| |  |||||||||| |||| | | |||     
T  29389113 ttcttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttg 29389212  T
Q  248 aaacatttcaaattttaaaatctgaatag 276  Q
    |||||||||  ||||||||||||||||||    
T  29389213 aaacatttcggattttaaaatctgaatag 29389241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 33013186 - 33013237
Alignment:
Q  162 tatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgaca 213  Q
    ||||| |||||||| ||| |||||||||||||||||||||||| ||||||||    
T  33013186 tatgagcttctcgcgtgttctatgcaatttagattataaaatctaaacgaca 33013237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 9929422 - 9929327
Alignment:
Q  180 cctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatag 276  Q
    |||||||| ||  ||||||| ||| | |||| |||||||| |||||||||||||||||| | | ||| ||| |||||| |||||||||||| |||||    
T  9929422 cctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaa-acacgttgaaagatttcagattttaaaatctaaatag 9929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 29263761 - 29263890
Alignment:
Q  146 gtttcttttcctatcttatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgt 245  Q
    ||||||||| | ||||||||| ||||| |||||  |||||   ||||||||||| ||||  ||||||||||||| |  ||||||| || |||| | |  |    
T  29263761 gtttctttttcgatcttatgagcttcttgcatgctctatgtggtttagattatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacat 29263860  T
Q  246 taaaacatttcaaattttaaaatctgaata 275  Q
    | ||||||||   |||||||||||||||||    
T  29263861 tgaaacattttcgattttaaaatctgaata 29263890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 2513185 - 2513122
Alignment:
Q  211 acataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 275  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||||   |||||| ||||||||||    
T  2513185 acataaacacctcataaaaatctccaaatc-atgttaaaacattttggattttagaatctgaata 2513122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 35424844 - 35424949
Alignment:
Q  158 atcttatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttca 257  Q
    |||||||||| ||||||   |||||||| | ||| ||||||| ||||  |||| |||||||||| |||||||||||||||| ||||||||||| ||||||    
T  35424844 atcttatgaatttctcgtgcgtcctatgtagtttggattatagaatctgaacggcataaacatcgcataaaaacctccaaa-atatgttaaaatatttca 35424942  T
Q  258 aatttta 264  Q
     ||||||    
T  35424943 gatttta 35424949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 4451933 - 4451853
Alignment:
Q  194 attataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 275  Q
    |||||| ||||  ||||||||||| | | ||||||||| || ||| | ||||||||||||||||||||||||||||||||||    
T  4451933 attatataatctgaacgacataaataacccataaaaacttcaaaa-acatgttaaaacatttcaaattttaaaatctgaata 4451853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 20953315 - 20953201
Alignment:
Q  181 ctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatg 280  Q
    |||| ||||| |||||||| ||| | ||| ||||||| |||| ||||||  ||| ||| | ||||| |||||||| | |||||||||||  ||||||| |    
T  20953315 ctatacaattaagattatagaattcgaacaacataaatatcttataaaattctcaaaaaacatgttgaaacattttagattttaaaatcccaatagaacg 20953216  T
Q  281 cgcgaaaaacttata 295  Q
    || || |||||||||    
T  20953215 cgtgagaaacttata 20953201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 40172473 - 40172542
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaa 238  Q
    ||||||||||||||||||||||  ||||||| |||   ||| ||||||||| |  |||||||||||||||    
T  40172473 ttctcgcatgtcctatgcaattcggattatagaatttgaacaacataaacacccaataaaaacctccaaa 40172542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 17116022 - 17115894
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 268  Q
    |||||||| |||||| ||| |||  |||||| ||| | ||||||||||||| | ||||||||| | |||| | | ||| ||| |||| | ||||||||||    
T  17116022 ttctcgcacgtcctacgcagtttgtattatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagattttaaaat 17115923  T
Q  269 ctgaatagaatgcgcgaaaaacttatagg 297  Q
    |  ||||||| ||| | |||||| |||||    
T  17115922 ccaaatagaacgcgaggaaaactcatagg 17115894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 24511008 - 24510906
Alignment:
Q  194 attataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaactta 293  Q
    |||||| ||| |||||| |||||||||| |||||||||||||||| ||| ||| ||| |||||| ||||||||||| ||||||  || | |||||||| |    
T  24511008 attatagaattcaaacggcataaacatcccataaaaacctccaaa-atacgtttaaatatttcagattttaaaatccgaatagggtgtgtgaaaaactca 24510910  T
Q  294 tagg 297  Q
    ||||    
T  24510909 tagg 24510906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 23046654 - 23046575
Alignment:
Q  195 ttataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 275  Q
    ||||| ||| ||||| ||||||||| | |||||||| ||||||| |    |||||||||||||||||||||||||||||||    
T  23046654 ttatataatacaaacaacataaacaccccataaaaatctccaaa-acgcattaaaacatttcaaattttaaaatctgaata 23046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 43050240 - 43050146
Alignment:
Q  180 cctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 275  Q
    |||||||| ||  ||||||| ||||||||||||||||| | |   |||||||||||||| | | ||| |||||||||| ||||||||||| |||||    
T  43050240 cctatgcagttcggattatagaatccaaacgacataaataccctgtaaaaacctccaaa-acacgttgaaacatttcagattttaaaatccgaata 43050146  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 19943459 - 19943509
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaaca 219  Q
    ||||||| ||||||||||| ||| ||||||| |||||||||| ||||||||    
T  19943459 ttctcgcgtgtcctatgcagtttggattatagaatccaaacggcataaaca 19943509  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 44647174 - 44647227
Alignment:
Q  180 cctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacct 233  Q
    ||||| |||||| ||||||| |||||||||| | ||||||| ||||||||||||    
T  44647174 cctatacaattttgattatagaatccaaacgtcgtaaacatatcataaaaacct 44647227  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 45195753 - 45195823
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatttta 264  Q
    ||||||| ||| | |||||||||||||||| ||||||| ||||||| ||| ||||||||||||| |||||||    
T  45195753 gattatataattcgaacgacataaacatcttataaaaatctccaaa-atacgttaaaacatttcgaatttta 45195823  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 12311917 - 12311811
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaactt 292  Q
    ||||||| ||||| ||||  ||||||| |||||||||| ||| ||| ||||||||||| | |||| || ||||||||| ||||  | |||||| |||||     
T  12311917 gattatagaatccgaacggaataaacacctcataaaaatctctaaaaatatgttaaaataattcagatgttaaaatctaaataagacgcgcgagaaactc 12311818  T
Q  293 ataggtg 299  Q
    |||||||    
T  12311817 ataggtg 12311811  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 29491946 - 29491989
Alignment:
Q  252 atttcaaattttaaaatctgaatagaatgcgcgaaaaacttata 295  Q
    |||| |||||||||||||||||||||| |||||| |||||||||    
T  29491946 attttaaattttaaaatctgaatagaacgcgcgagaaacttata 29491989  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 41945210 - 41945279
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatttta 264  Q
    ||||||| ||||| ||||||||||||| | ||||||||||| |||| | |||||||||||||||| ||||||    
T  41945210 gattatataatccgaacgacataaaca-cccataaaaaccttcaaa-acatgttaaaacatttcagatttta 41945279  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 32556493 - 32556596
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaactt 292  Q
    ||||||| ||||||||||  ||||  | |||||||||||||||||| ||| |||| || |||||| ||||||||||| |||||| | | |||| |||||     
T  32556493 gattatataatccaaacggtataattacctcataaaaacctccaaa-atacgttacaatatttcagattttaaaatccgaataggacgtgcgagaaactc 32556591  T
Q  293 atagg 297  Q
    |||||    
T  32556592 atagg 32556596  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 6362858 - 6362791
Alignment:
Q  139 ttagaccgtttcttttcctatcttatgaacttctcgcatgtcctatgcaatttagattataaaatcca 206  Q
    |||||| ||||||||| |||||||||||  |||||||  ||| ||||||||||  |||||||||||||    
T  6362858 ttagactgtttctttttctatcttatgagtttctcgcgcgtcttatgcaatttgaattataaaatcca 6362791  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 40491790 - 40491728
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacattt 255  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||| | | ||| ||||||||    
T  40491790 gattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattt 40491728  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 7599518 - 7599433
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaa 278  Q
    ||||||||||||| |||||||| ||||  | ||||||||||||||| | |  || ||| ||||||||||||| |||| | ||||||    
T  7599518 gattataaaatccgaacgacattaacactttataaaaacctccaaaaacacctttaaatatttcaaattttagaatccgtatagaa 7599433  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 22017748 - 22017651
Alignment:
Q  169 ttctcgcatgtcctatgcaatttagattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaa 266  Q
    |||| ||| |||||||||| ||  ||||||| ||||| || | |||||||| | |||||||||||||||| |   ||| |||||||||| ||||||||    
T  22017748 ttcttgcacgtcctatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaaacatttcagattttaaa 22017651  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 18401308 - 18401224
Alignment:
Q  212 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatag 296  Q
    |||||||| |||||| | ||||||||| | | ||| |||||||||| ||| || |||||||||||||  ||||| ||||| ||||    
T  18401308 cataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaacacgcgataaactcatag 18401224  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 6521 - 6459
Alignment:
Q  193 gattataaaatccaaacgacataaacatctcataaaaacctccaaatatatgttaaaacattt 255  Q
    ||||||| ||||| ||||||||||||  |||||||||||||| ||| ||| ||| ||||||||    
T  6521 gattatagaatccgaacgacataaacccctcataaaaacctctaaaaatacgttgaaacattt 6459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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