View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_24 (Length: 392)
Name: NF20775_low_24
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 48396614 - 48397012
Alignment:
| Q |
1 |
tagctttggtaccgccaaggtaagcagttaatgttttgatttaattccaaattcagcggcccttgatgccgtccaggttcaatattatgcattcagaaag |
100 |
Q |
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| T |
48396614 |
tagctttggtaccgccaaggtaagccgttaatgttttgattttattccaaattcagcggcccttgatgccgtccaggttcaatattatgcattcagaaag |
48396713 |
T |
|
| Q |
101 |
ttccttgaactaacatgatactccttccattgcagtcttatttgaaattgaaagtaggaaagggaaaaaacgtgtgggatatgtaataccat-------- |
192 |
Q |
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| T |
48396714 |
ttccttgaactaacatgatactccttccattgcagtcttatttgaaattgaa---aggaaagggaaaaaacgtgtgggatatgtaataccattatagcat |
48396810 |
T |
|
| Q |
193 |
------------atagat-aataaagaaaatcatgtttgtttatcacataagccttacgtatgaattgacatcatc----tctttatatcaaatattgca |
275 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48396811 |
tgcacacgtccaatagataaaaaaagaaaatcatgtttgtttatcacataagccttacgtatgaattgacatcatctctttctttatatcaaatattgca |
48396910 |
T |
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| Q |
276 |
tgatccgtcccgtccccactcatatcatatcgctttccttctagataacattatggatgcctttcccttccatcataataccaataataatttacctatg |
375 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48396911 |
tgatccttcccgtccccactcatatcatatcgctttccttctagataacattatggatgcctttcccttccatcataataccaataataatttacctatg |
48397010 |
T |
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