View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_25 (Length: 391)
Name: NF20775_low_25
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 376
Target Start/End: Original strand, 48396675 - 48397012
Alignment:
| Q |
61 |
cttgatgccgtccaggttcaatattatgcattcagaaagttccttgaactaacatgatactccttccattgcagtcttatttgaaattgaaagtaggaaa |
160 |
Q |
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| T |
48396675 |
cttgatgccgtccaggttcaatattatgcattcagaaagttccttgaactaacatgatactccttccattgcagtcttatttgaaattgaaag---gaaa |
48396771 |
T |
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| Q |
161 |
gggaaaaaacgtgtgggatatgtaataccat--------------------atagataataaa-gaaaatcatgtttgtttatcacataagccttacgta |
239 |
Q |
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| T |
48396772 |
gggaaaaaacgtgtgggatatgtaataccattatagcattgcacacgtccaatagataaaaaaagaaaatcatgtttgtttatcacataagccttacgta |
48396871 |
T |
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| Q |
240 |
tgaattgacatcatctctt----tatatcaaatattgcatgatccgtcccgtccccactcatatcatatcgctttccttctagataacattatggatgcc |
335 |
Q |
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| T |
48396872 |
tgaattgacatcatctctttctttatatcaaatattgcatgatccttcccgtccccactcatatcatatcgctttccttctagataacattatggatgcc |
48396971 |
T |
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| Q |
336 |
tttcccttccatcataataccaataataatttacctatgtt |
376 |
Q |
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| T |
48396972 |
tttcccttccatcataataccaataataatttacctatgtt |
48397012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 48396638 - 48396575
Alignment:
| Q |
1 |
gcttaccttggcggtaccaaagctattaaggatgcaaattcaatatttggtcagttggtacttg |
64 |
Q |
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| T |
48396638 |
gcttaccttggcggtaccaaagctattaaggatgcaaattcaatatttggtgagttggtacttg |
48396575 |
T |
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