View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_27 (Length: 378)
Name: NF20775_low_27
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 16462821 - 16463154
Alignment:
| Q |
13 |
atactagttgacagaagatgtaagaaaagtgtgaaaatgttttctaaaatgcaggaactgttatcctagatcactagataacaaaaaagttgcaggaaag |
112 |
Q |
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| T |
16462821 |
atactagttgacagaagcagtaagaaaagtgtgaaaatgttttctaaaatgcaggaactgttatcctggatcactagataacaaaaaagttgcaggaaag |
16462920 |
T |
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| Q |
113 |
attgttatttgtgctaacgatgatcaaaatcttacacgcaaaatgaagaagctaattttacaagatgcgggagccatggggatgatacttattgagaagg |
212 |
Q |
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| T |
16462921 |
attgttatttgtgctaacgatgatcaaaatcttacacgcaaaatgaagaagctaattttacaagatgcgggagccatggggatgatacttattgagaagg |
16463020 |
T |
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| Q |
213 |
aacacctagatgctccctttgatgcaggtttatttcccttcacagaagttggcaatcttgaagggcttcaaatccttaagtatataaaatctaccaagta |
312 |
Q |
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| T |
16463021 |
aacacctagatgctccctttgatgcaggtttatttcccttcacagaagttggcaatcttgaagggcttcaaatccttaagtatataaaatctaccaagta |
16463120 |
T |
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| Q |
313 |
agttctatcatcctttgcataaaaacttcctgtt |
346 |
Q |
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| T |
16463121 |
agttctatcatcctttgcataaaaacttcctgtt |
16463154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 16492909 - 16492995
Alignment:
| Q |
228 |
cctttgatgcaggtttatttcccttcacagaagttggcaatcttgaagggcttcaaatccttaagtatataaaatctaccaagtaag |
314 |
Q |
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| T |
16492909 |
cctttgatgcgggtgcatttcccttcacagagattggaaatcttgaagggcatcagatctttcagtacataaactctaccaagtaag |
16492995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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