View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_28 (Length: 356)

Name: NF20775_low_28
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_28
NF20775_low_28
[»] chr7 (12 HSPs)
chr7 (1-336)||(44819575-44819910)
chr7 (192-241)||(36502331-36502380)
chr7 (192-241)||(37491279-37491328)
chr7 (120-166)||(37930779-37930825)
chr7 (122-168)||(41106099-41106145)
chr7 (195-236)||(24617808-24617849)
chr7 (181-240)||(26477235-26477294)
chr7 (181-240)||(26553675-26553734)
chr7 (179-238)||(33329977-33330036)
chr7 (120-241)||(27165178-27165303)
chr7 (189-233)||(35216490-35216534)
chr7 (193-241)||(43813131-43813179)
[»] chr4 (23 HSPs)
chr4 (121-239)||(6462726-6462844)
chr4 (120-252)||(40575852-40575984)
chr4 (192-242)||(3094272-3094322)
chr4 (139-241)||(29006841-29006943)
chr4 (195-252)||(9993532-9993589)
chr4 (192-241)||(54164898-54164947)
chr4 (192-240)||(19934723-19934771)
chr4 (187-246)||(19936496-19936555)
chr4 (128-238)||(19596019-19596129)
chr4 (197-243)||(49490554-49490600)
chr4 (189-238)||(2254035-2254084)
chr4 (136-241)||(18423921-18424026)
chr4 (192-241)||(31864334-31864383)
chr4 (179-236)||(47397891-47397948)
chr4 (121-166)||(52674830-52674875)
chr4 (192-236)||(2253965-2254009)
chr4 (118-166)||(2404795-2404843)
chr4 (137-241)||(5816569-5816673)
chr4 (192-240)||(26636525-26636573)
chr4 (192-236)||(31280418-31280462)
chr4 (192-240)||(36688374-36688422)
chr4 (192-240)||(38539485-38539533)
chr4 (120-240)||(50686018-50686138)
[»] chr3 (10 HSPs)
chr3 (120-241)||(10872685-10872806)
chr3 (189-246)||(42452597-42452654)
chr3 (192-241)||(36571381-36571430)
chr3 (189-233)||(7981227-7981271)
chr3 (208-252)||(36906543-36906587)
chr3 (192-240)||(42787700-42787748)
chr3 (180-216)||(43367249-43367285)
chr3 (120-240)||(45736700-45736820)
chr3 (120-236)||(51060674-51060790)
chr3 (192-252)||(54783372-54783432)
[»] chr1 (21 HSPs)
chr1 (124-241)||(25391842-25391958)
chr1 (192-241)||(38834617-38834666)
chr1 (194-241)||(3906848-3906895)
chr1 (189-236)||(44673897-44673944)
chr1 (198-240)||(43895627-43895669)
chr1 (192-241)||(19580278-19580327)
chr1 (181-241)||(14365439-14365499)
chr1 (189-261)||(43728172-43728244)
chr1 (192-243)||(19175673-19175724)
chr1 (181-240)||(50503190-50503249)
chr1 (189-243)||(13319901-13319955)
chr1 (139-236)||(9501386-9501483)
chr1 (120-241)||(14891751-14891872)
chr1 (192-241)||(27939193-27939242)
chr1 (192-236)||(5246226-5246270)
chr1 (192-240)||(6156641-6156689)
chr1 (120-168)||(18607164-18607212)
chr1 (138-242)||(25547476-25547580)
chr1 (179-235)||(43318080-43318136)
chr1 (120-236)||(43603638-43603754)
chr1 (120-240)||(50550132-50550252)
[»] chr8 (11 HSPs)
chr8 (192-240)||(1988928-1988976)
chr8 (120-225)||(13964432-13964537)
chr8 (189-242)||(35781232-35781285)
chr8 (178-236)||(7286645-7286703)
chr8 (139-241)||(28882696-28882798)
chr8 (195-237)||(39099553-39099595)
chr8 (192-241)||(24052913-24052962)
chr8 (192-241)||(26998675-26998724)
chr8 (192-236)||(20269775-20269819)
chr8 (192-236)||(21056404-21056448)
chr8 (192-240)||(45045462-45045510)
[»] chr2 (10 HSPs)
chr2 (120-238)||(596036-596154)
chr2 (120-165)||(39939843-39939888)
chr2 (197-241)||(34359579-34359623)
chr2 (120-240)||(36547354-36547474)
chr2 (195-238)||(36104379-36104422)
chr2 (120-169)||(2144145-2144194)
chr2 (199-240)||(4860330-4860371)
chr2 (120-169)||(6166101-6166150)
chr2 (192-240)||(18009625-18009673)
chr2 (189-240)||(29765670-29765722)
[»] chr6 (4 HSPs)
chr6 (181-241)||(12383663-12383723)
chr6 (193-241)||(14173396-14173444)
chr6 (193-241)||(14177932-14177980)
chr6 (192-240)||(16121050-16121098)
[»] chr5 (9 HSPs)
chr5 (120-228)||(17153442-17153550)
chr5 (120-246)||(694207-694333)
chr5 (197-259)||(4745401-4745463)
chr5 (192-241)||(27895903-27895952)
chr5 (195-240)||(42425332-42425377)
chr5 (181-241)||(71265-71325)
chr5 (197-241)||(11607376-11607420)
chr5 (189-241)||(25713780-25713832)
chr5 (120-168)||(32398082-32398130)
[»] scaffold0019 (1 HSPs)
scaffold0019 (178-236)||(42774-42832)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 44819910 - 44819575
Alignment:
Q  1 gtatttatcatatttcttaaagtagattcaataaataattgannnnnnnnnaggaaaaataattgacttatttattgaacttattttaagaaatgtgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44819910 gtatttatcatatttcttaaagtagattcaataaataattgatttttttttaggaaaaataattgacttatttattgaacttattttaagaaatgtgata 44819811  T
Q  101 aactacacaccttgaagatttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttat 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44819810 aactgcacaccttgaagatttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttat 44819711  T
Q  201 ttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgtaaatcattagcggtaattactctataaattgtaattatattgtttatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44819710 ttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgtaaatcattagcggtaattactctataaattgtaattatattgtttatga 44819611  T
Q  301 ataaaaaatatcttcattcacaacaacaaactatct 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  44819610 ataaaaaatatcttcattcacaacaacaaactatct 44819575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 36502331 - 36502380
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  36502331 atcatttattcagtaaatctaaaaaatatatttttgtttataatagtgac 36502380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 37491328 - 37491279
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  37491328 atcatttatttaataaatctaaaaagtaaatttttgcttataatagtgac 37491279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 37930825 - 37930779
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtat 166  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||    
T  37930825 ttataaacaaaaattaatattttagattcatttgataaataatgtat 37930779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 41106099 - 41106145
Alignment:
Q  122 ataaacaaaaatcgatattttaaattcatttgataaataatgtatat 168  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||    
T  41106099 ataaacaaaaatctatattttaaattcatttaattaataatgtatat 41106145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 24617849 - 24617808
Alignment:
Q  195 atttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  24617849 atttattgaatgaatctaaaaaatacatttttgtttataata 24617808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 26477235 - 26477294
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||| || |||||| ||| ||||||||| ||| ||| ||||||||||||||||||||    
T  26477235 agatcatatacatcattaattaaataaatcttaaatataaatttttgtttataatagtga 26477294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 26553675 - 26553734
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||| || |||||| ||| ||||||||| ||| ||| ||||||||||||||||||||    
T  26553675 agatcatatacatcattaattaaataaatcttaaatataaatttttgtttataatagtga 26553734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 33330036 - 33329977
Alignment:
Q  179 atagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagt 238  Q
    ||||||||| ||||||||||||| ||||||| | ||| ||| ||||||| ||||||||||    
T  33330036 atagatcatttatatcatttattaaataaattttaaagatagatttttgcttataatagt 33329977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 27165178 - 27165303
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatc----taaaa 215  Q
    ||||||| |||| || || ||||| |||||||| |||||| ||||||||| |  ||  |||||||||| || |||||||||| ||| |||     |||||    
T  27165178 ttataaataaaagtctattttttagattcatttaataaattatgtatatggtttatttaatagatcatatacatcatttattgaatgaataaaggtaaaa 27165277  T
Q  216 aatacatttttgtttataatagtgac 241  Q
    | || |||||| ||||||||||||||    
T  27165278 agtaaatttttatttataatagtgac 27165303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 35216534 - 35216490
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttata 233  Q
    ||||||||||||| ||| ||||||||| ||| |||||||||||||    
T  35216534 tatatcatttattgaatgaatctaaaatataaatttttgtttata 35216490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 43813179 - 43813131
Alignment:
Q  193 tcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||| ||| |||||||||| || ||||||| |||||||||||||    
T  43813179 tcatttattgaatgaatctaaaaattaaatttttgcttataatagtgac 43813131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 6462726 - 6462844
Alignment:
Q  121 tataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatac 220  Q
    |||||||||||||| |  |||||  ||||||  |||||| |||||| ||||  ||  |||||||||  || |||||||||| ||| |||||||||||||     
T  6462726 tataaacaaaaatctactttttaggttcattcaataaatgatgtatgtgatccattaaatagatcacatacatcatttattgaatgaatctaaaaaataa 6462825  T
Q  221 atttttgtttataatagtg 239  Q
    | |||||||||||||||||    
T  6462826 aattttgtttataatagtg 6462844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 40575852 - 40575984
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||  | |||||||||||||||  |||||||||||||||||| |||  | | ||||| || || ||| ||| |||||||||||||  |     
T  40575852 ttataaacaaaaatgaacattttaaattcatttattaaataatgtatatgatatataataaaaatcatatacattattaattgaataaatctaaaatgtt 40575951  T
Q  220 catttttgtttataatagtgactgaaatgtgta 252  Q
     ||| || ||||||||| ||||  |||||||||    
T  40575952 aattattatttataataatgaccaaaatgtgta 40575984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 3094322 - 3094272
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgact 242  Q
    |||||||||| ||| ||| ||||||||| ||||||||||||||||||||||    
T  3094322 atcatttattgaatgaatataaaaaataaatttttgtttataatagtgact 3094272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 29006943 - 29006841
Alignment:
Q  139 ttttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagt 238  Q
    |||||||||||||  |||||| |||||| || |  ||  ||| |||||  || |||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  29006943 ttttaaattcattcaataaatgatgtatgtggtctatttaatggatcacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagt 29006844  T
Q  239 gac 241  Q
    |||    
T  29006843 gac 29006841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 9993532 - 9993589
Alignment:
Q  195 atttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgta 252  Q
    ||||||| |||||||||||||| |  ||||||||||||||||||||||| || |||||    
T  9993532 atttattgaataaatctaaaaagtgaatttttgtttataatagtgactggaaggtgta 9993589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 54164898 - 54164947
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||| ||||||||||||| ||||||| |||||||||||||    
T  54164898 atcatttattgaatgaatctaaaaaatagatttttgcttataatagtgac 54164947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19934723 - 19934771
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  19934723 atcatttattgaatgaatctaaaaaatagatttttgcttataatagtga 19934771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 19936555 - 19936496
Alignment:
Q  187 tgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaa 246  Q
    ||||||| ||||||| ||| |||||||||| |  |||||||||||||||||||| |||||    
T  19936555 tgtatataatttattcaatgaatctaaaaagttgatttttgtttataatagtgattgaaa 19936496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 19596019 - 19596129
Alignment:
Q  128 aaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttg 227  Q
    |||||| |||||||||  ||||||| |||||| |||||| ||||   ||  ||||||||| ||||||||||||| ||| ||| ||||| ||| |  |||     
T  19596019 aaaaattgatattttaggttcatttaataaatgatgtatttgatttttaatatagatcatatatatcatttattgaatgaatttaaaatataaaacttta 19596118  T
Q  228 tttataatagt 238  Q
    |||||||||||    
T  19596119 tttataatagt 19596129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 49490554 - 49490600
Alignment:
Q  197 ttatttaataaatctaaaaaatacatttttgtttataatagtgactg 243  Q
    ||||||||||||| | ||||||  |||||||||||||||||||||||    
T  49490554 ttatttaataaatttgaaaaatgaatttttgtttataatagtgactg 49490600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 2254035 - 2254084
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagt 238  Q
    ||||||||||||| ||| ||| ||||||||| | ||||||||||||||||    
T  2254035 tatatcatttattgaatgaatttaaaaaataaacttttgtttataatagt 2254084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 18423921 - 18424026
Alignment:
Q  136 atattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataat 235  Q
    |||||||| |||||||  || ||| |||||||||||   ||  ||| ||||| || |||||||| | ||||||||||| | ||  |||||||||||||||    
T  18423921 atattttagattcattcaattaatgatgtatatgatctttattataaatcatatacatcatttaatgaataaatctaatatatttatttttgtttataat 18424020  T
Q  236 agtgac 241  Q
    ||||||    
T  18424021 agtgac 18424026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 31864334 - 31864383
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||| ||||||||||||| |||||| ||||||||| ||||    
T  31864334 atcatttattaaatgaatctaaaaaataaatttttatttataataatgac 31864383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 47397948 - 47397891
Alignment:
Q  179 atagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    ||||||||  ||||| ||||||| ||||||||||||||||| | || |||||||||||    
T  47397948 atagatcacatatattatttattgaataaatctaaaaaataaaattctgtttataata 47397891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 52674830 - 52674875
Alignment:
Q  121 tataaacaaaaatcgatattttaaattcatttgataaataatgtat 166  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  52674830 tataaacaaaaatttatattttaaattcatttaataaattatgtat 52674875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 2254009 - 2253965
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||| | ||||||||||||||||  ||||||||||||||||    
T  2254009 atcatttaatgaataaatctaaaaaattaatttttgtttataata 2253965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 2404843 - 2404795
Alignment:
Q  118 atttataaacaaaaatcgatattttaaattcatttgataaataatgtat 166  Q
    ||||||||||||||||| |||||||||||| |||| |||| | ||||||    
T  2404843 atttataaacaaaaatctatattttaaattaatttaataattgatgtat 2404795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 5816569 - 5816673
Alignment:
Q  137 tattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||||||||| || ||| |||||||||||   ||  ||||||||  ||||||||||| | ||| |||||||||   | | |||| |||||||||    
T  5816569 tattttaaattcatttaattaatgatgtatatgatctttattatagatcacatatatcatttaatgaatgaatctaaaatgcaaagttttatttataata 5816668  T
Q  237 gtgac 241  Q
    |||||    
T  5816669 gtgac 5816673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 26636525 - 26636573
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||| ||||||||||||| ||||||  ||||||||||||    
T  26636525 atcatttattgaatgaatctaaaaaataaatttttacttataatagtga 26636573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 31280418 - 31280462
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||| ||| || |||||||||| ||||||||||||||||    
T  31280418 atcatttattaaatgaacctaaaaaataaatttttgtttataata 31280462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 36688422 - 36688374
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||| || |||||||||| ||||||||||||| ||||||    
T  36688422 atcatttattaaatgaacctaaaaaatagatttttgtttatagtagtga 36688374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 38539533 - 38539485
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||||||| ||||| ||| ||||||| ||||||||||||    
T  38539533 atcatttattgaataaatttaaaatataaatttttgcttataatagtga 38539485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 50686018 - 50686138
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||   ||||||||||||||||  |||||||||||| ||||  |||  | ||||||| || ||| || ||| ||| ||||||||| |||    
T  50686018 ttataaacaaaaattagtattttaaattcatttattaaataatgtatgtgatctataataaagatcatatacatcgttaattgaatgaatctaaaatata 50686117  T
Q  220 catttttgtttataatagtga 240  Q
     | | ||| |||| |||||||    
T  50686118 aaatgttgcttatgatagtga 50686138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 10872685 - 10872806
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    |||||| |||||||| ||||||||||||||||   ||||| |||||| ||||  |||  | ||| ||| || |||||| ||| ||| ||||||||| |||    
T  10872685 ttataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtgatttataataaagaccatatacatcattaattgaatgaatctaaaatata 10872784  T
Q  220 catttttgtttataatagtgac 241  Q
     ||||||| |||||||||||||    
T  10872785 aatttttgcttataatagtgac 10872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 42452654 - 42452597
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaa 246  Q
    ||||||||||||| |||| |||||||||||  | |||||||||||| |||||||||||    
T  42452654 tatatcatttattcaatacatctaaaaaatgaaattttgtttataacagtgactgaaa 42452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 36571430 - 36571381
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||||||||||||||| | | ||||| |||||||||||||    
T  36571430 atcatttattgaataaatctaaaaaagaaacttttgcttataatagtgac 36571381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 7981227 - 7981271
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttata 233  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||    
T  7981227 tatatcatttattgaataaatctaaaatataaatttttgcttata 7981271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 36906587 - 36906543
Alignment:
Q  208 atctaaaaaatacatttttgtttataatagtgactgaaatgtgta 252  Q
    |||||||||||| || |||||||||||||||||| ||||| ||||    
T  36906587 atctaaaaaatagatatttgtttataatagtgaccgaaatatgta 36906543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 42787700 - 42787748
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||| || |||||||||  ||||||||||||||||||||    
T  42787700 atcatttattgaatgaacctaaaaaatgaatttttgtttataatagtga 42787748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 43367285 - 43367249
Alignment:
Q  180 tagatcatgtatatcatttatttaataaatctaaaaa 216  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  43367285 tagatcatatatatcatttatttaatgaatctaaaaa 43367249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 45736700 - 45736820
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    |||||| |||||||||||| |||| |||||||   ||||| |||||| || |  |||  | |||||||||| |||||| ||| ||| ||| ||||| |||    
T  45736700 ttataagcaaaaatcgatagtttagattcattcattaaatgatgtatgtggtctataataaagatcatgtacatcattaattgaatgaatttaaaatata 45736799  T
Q  220 catttttgtttataatagtga 240  Q
     | ||||| ||||||||||||    
T  45736800 aaattttgcttataatagtga 45736820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 51060790 - 51060674
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||| |||||||| ||| ||||  ||||| |||||  ||||| |||  | ||||||| || || ||| ||| ||| |||||||||  ||    
T  51060790 ttataaacaaaaatcaatattttagattaatttattaaatgatgtacgtgatatataataaagatcatatacattattaattgaattaatctaaaatgta 51060691  T
Q  220 catttttgtttataata 236  Q
     ||||||| ||||||||    
T  51060690 aatttttgcttataata 51060674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 54783432 - 54783372
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgta 252  Q
    |||| ||| ||||| |||||||||  |  |||||||||||||||||||||||||| |||||    
T  54783432 atcaattaattaatgaatctaaaatgttaatttttgtttataatagtgactgaaaggtgta 54783372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 25391958 - 25391842
Alignment:
Q  124 aaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatt 223  Q
    ||||||||| | | ||||||||||||||  |||||| || ||||||||| |||  ||| ||||| |||||| |||||| ||| ||||| ||||||||| |    
T  25391958 aaacaaaaaaccacattttaaattcattcaataaatgatatatatgatatatattataaatcatatatatcgtttattgaatgaatct-aaaaatacaat 25391860  T
Q  224 tttgtttataatagtgac 241  Q
    ||||||| ||||| ||||    
T  25391859 tttgtttgtaataatgac 25391842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 38834666 - 38834617
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  38834666 atcatttatttaatgaatctaaaaaataaatttttgcttataatagtgac 38834617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 3906848 - 3906895
Alignment:
Q  194 catttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  3906848 catttattaaatgaatctaaaaaataaatttttgtttataatagtgac 3906895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 44673944 - 44673897
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  44673944 tatatcatttattaaataaacctaaaaaataaatttttgtttataata 44673897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 43895627 - 43895669
Alignment:
Q  198 tatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  43895627 tatttaataaatttaaaaaatacatttttgtttataacagtga 43895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 19580278 - 19580327
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||| ||||||||||||| | |||||||||||||||||||    
T  19580278 atcatttattgaatgaatctaaaaaatatacttttgtttataatagtgac 19580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 14365439 - 14365499
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||| ||||||||| ||| ||| ||| ||||| ||| |||||||||||||||||||||    
T  14365439 agatcatatatatcattaattaaatgaatataaaatatatatttttgtttataatagtgac 14365499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 43728244 - 43728172
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgtaaatcattag 261  Q
    ||||||||| ||| ||| || |||||| ||| |||||||||||||||||||||||| | ||||| || |||||    
T  43728244 tatatcattaattaaattaacctaaaatatagatttttgtttataatagtgactgagaggtgtatataattag 43728172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 19175673 - 19175724
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgactg 243  Q
    |||||||||| ||| |||||||||| || ||||||| |||||||||||||||    
T  19175673 atcatttattgaatgaatctaaaaagtagatttttgcttataatagtgactg 19175724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 50503249 - 50503190
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||| || |||||| ||| ||||||||||||| ||| |||| |||||||||||||||    
T  50503249 agatcatatacatcattaattgaataaatctaaaatataaatttgtgtttataatagtga 50503190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 13319901 - 13319955
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgactg 243  Q
    ||||||||||||| ||||| | |||||| || ||||||| |||||||||||||||    
T  13319901 tatatcatttattaaataattttaaaaagtaaatttttgcttataatagtgactg 13319955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 9501483 - 9501386
Alignment:
Q  139 ttttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||| ||||||  ||||||||||||| ||||| ||   ||||||||  |  || ||||||| |||| || ||||||||| ||||||||||||||||    
T  9501483 ttttaagttcattcaataaataatgtatgtgatatattatatagatcacatgcataatttattgaatacatataaaaaataaatttttgtttataata 9501386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 14891751 - 14891872
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||| ||||||| |||||||||  |||||   ||||| ||||||||| |  |||  | ||| ||| || ||||||||||  ||||||||||||  ||    
T  14891751 ttataaagaaaaatcaatattttaagatcattcattaaatgatgtatatggtctataataaagaccatatacatcatttattggataaatctaaaattta 14891850  T
Q  220 catttttgtttataatagtgac 241  Q
     ||||||| |||||||||||||    
T  14891851 aatttttgcttataatagtgac 14891872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 27939242 - 27939193
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||||  |||||||||||||||  ||||||| |||||||||||||    
T  27939242 atcatttattatataaatctaaaaaatgaatttttgcttataatagtgac 27939193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 5246226 - 5246270
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||    
T  5246226 atcatttattcaatgaatctaaaaaatagttttttgtttataata 5246270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 6156689 - 6156641
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||| |||||||||| |  ||||||||||||||||||||    
T  6156689 atcatttattgaatgaatctaaaaagttgatttttgtttataatagtga 6156641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 18607212 - 18607164
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatat 168  Q
    ||||||||||||||| ||||||||||||||||  || |||||| |||||    
T  18607212 ttataaacaaaaatctatattttaaattcattcaattaataatatatat 18607164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 25547580 - 25547476
Alignment:
Q  138 attttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatag 237  Q
    ||||||| ||||||  ||||||||||||| ||||| |||  | ||| ||| || |||||||||| ||| |||||||||  |  | ||||| |||||||||    
T  25547580 attttaagttcattcaataaataatgtatgtgatatatattaaagaccatatacatcatttattaaatgaatctaaaatgtcaaattttgattataatag 25547481  T
Q  238 tgact 242  Q
    |||||    
T  25547480 tgact 25547476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 43318080 - 43318136
Alignment:
Q  179 atagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataat 235  Q
    ||||| ||||||||||||||||| ||| ||||||||||||  ||| ||| |||||||    
T  43318080 atagaccatgtatatcatttattaaatgaatctaaaaaatgaattcttgcttataat 43318136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 43603754 - 43603638
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||  |  ||||| ||||| |  |||||| |||||||||||| |||  ||| | ||  ||||| ||||||||||| ||||||| ||||     
T  43603754 ttataaacaaaaatatagtttttagattcaatgaataaattatgtatatgatatatattatataccacatatataatttatttaatgaatctaacaaatg 43603655  T
Q  220 catttttgtttataata 236  Q
     ||||||| ||||||||    
T  43603654 aatttttgcttataata 43603638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 50550132 - 50550252
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||| ||||||| | ||| ||||||||||  || |||||||||||||||   ||  ||||||||  || |||||||| | ||| |||||||||  |     
T  50550132 ttataaataaaaatcaacattataaattcattcaattaataatgtatatgatctttattatagatcacatacatcatttaatgaatgaatctaaaatgtt 50550231  T
Q  220 catttttgtttataatagtga 240  Q
     |||||| |||||||||||||    
T  50550232 gatttttctttataatagtga 50550252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 1988928 - 1988976
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  1988928 atcatttattcaataaatttaaaaaatatatttttgtttataatagtga 1988976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 13964432 - 13964537
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    |||||| |||||||| | ||||||||||||||  |||||| |||||| || |  |||  ||||| |||||| |||||||| | ||| ||||||||||||     
T  13964432 ttataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaatgaatctaaaaaatg 13964531  T
Q  220 catttt 225  Q
    ||||||    
T  13964532 catttt 13964537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35781285 - 35781232
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgact 242  Q
    ||||||||||||| ||| || |||||||||| | ||||||||||||||||||||    
T  35781285 tatatcatttattgaatgaacctaaaaaataaaattttgtttataatagtgact 35781232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 7286645 - 7286703
Alignment:
Q  178 aatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    ||||||| || ||||||||||||| ||| || |||||||||| |||||| |||||||||    
T  7286645 aatagattatatatatcatttattgaatgaacctaaaaaatatatttttatttataata 7286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 28882696 - 28882798
Alignment:
Q  139 ttttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagt 238  Q
    ||||| |||||||  |||||| |||||| || || ||| |||||| ||  ||||||||||||| |||||| ||||||  |  ||||||| ||||||||||    
T  28882696 ttttagattcattcaataaatgatgtatgtggtatatataatagaccacatatatcatttattgaataaacctaaaaggttgatttttgcttataatagt 28882795  T
Q  239 gac 241  Q
    |||    
T  28882796 gac 28882798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 39099595 - 39099553
Alignment:
Q  195 atttatttaataaatctaaaaaatacatttttgtttataatag 237  Q
    ||||||| |||||||||||||||| |||||||| |||||||||    
T  39099595 atttattcaataaatctaaaaaatgcatttttgcttataatag 39099553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 24052913 - 24052962
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||| || ||||||| || |||||||||||||||||||||    
T  24052913 atcatttattcaatgaacctaaaaagtagatttttgtttataatagtgac 24052962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 26998724 - 26998675
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||| | |||||| |||||||||  |||||||||||||||||||||    
T  26998724 atcatttaataaataaacctaaaaaattaatttttgtttataatagtgac 26998675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 20269819 - 20269775
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||    
T  20269819 atcatttattgaataaacctaaaaaataattttttgtttataata 20269775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 21056448 - 21056404
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||    
T  21056448 atcatttattgaataaacctaaaaaataattttttgtttataata 21056404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 45045462 - 45045510
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||| ||| ||| ||||||||| ||| ||||||||||||||||||||    
T  45045462 atcattaattgaatgaatctaaaatatagatttttgtttataatagtga 45045510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 596154 - 596036
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||| | |||| ||||||||||  |||||||||||||||||  |||  | |||| || || |||||| ||   || ||||||||| ||     
T  596154 ttataaacaaaaatcaacatttcaaattcatttattaaataatgtatatgatctataataaagattatatacatcattaataagatgaatctaaaatatt 596055  T
Q  220 catttttgtttataatagt 238  Q
     ||||||||||||||||||    
T  596054 aatttttgtttataatagt 596036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 39939888 - 39939843
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgta 165  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||    
T  39939888 ttataaacaaaaattgatattttaaattcatttaataaatgatgta 39939843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 34359623 - 34359579
Alignment:
Q  197 ttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||    
T  34359623 ttatttaatgaatctaaaaaataattttttgtttataatagtgac 34359579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 36547354 - 36547474
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    |||||||||||||| || ||||||||||||||| |||||| |||||| ||||   ||  ||||||||  || |||||||||| ||| || ||  || ||     
T  36547354 ttataaacaaaaattgacattttaaattcatttaataaatgatgtatgtgatctttaatatagatcacatacatcatttattgaatgaacctgcaatatt 36547453  T
Q  220 catttttgtttataatagtga 240  Q
     | ||||||||||||||||||    
T  36547454 aaattttgtttataatagtga 36547474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 36104379 - 36104422
Alignment:
Q  195 atttatttaataaatctaaaaaatacatttttgtttataatagt 238  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||    
T  36104379 atttatttaataaatttaaacaataaatttttgtttataatagt 36104422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 2144145 - 2144194
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatg 169  Q
    ||||||||||||||  | ||||||| ||||||| ||||||||||||||||    
T  2144145 ttataaacaaaaattcacattttaagttcatttaataaataatgtatatg 2144194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 4860330 - 4860371
Alignment:
Q  199 atttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  4860330 atttaataaatctaaaaaatagatttttgcttatattagtga 4860371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 6166150 - 6166101
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatg 169  Q
    ||||||||||||||| | ||||||||||||||  |||||| |||||||||    
T  6166150 ttataaacaaaaatctacattttaaattcattcaataaattatgtatatg 6166101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 18009673 - 18009625
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||  ||| ||||||||||||| |||||| |||||||||||||    
T  18009673 atcatttatcaaatgaatctaaaaaatagatttttatttataatagtga 18009625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 29765722 - 29765670
Alignment:
Q  189 tatatcatttatttaa-taaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||||||||| || ||||||||| ||||| ||||||| ||||||||||||    
T  29765722 tatatcatttattcaaataaatctaagaaatatatttttgcttataatagtga 29765670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 12383663 - 12383723
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| |||||| ||| ||| |||||||||  || |||||||||||||||||||||    
T  12383663 agatcatgtacatcattaattgaattaatctaaaatgtagatttttgtttataatagtgac 12383723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14173444 - 14173396
Alignment:
Q  193 tcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||| ||| |||||||||| || ||||||| |||||||||||||    
T  14173444 tcatttattgaatgaatctaaaaattagatttttgcttataatagtgac 14173396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14177980 - 14177932
Alignment:
Q  193 tcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||| ||| |||||||||| || ||||||| |||||||||||||    
T  14177980 tcatttattgaatgaatctaaaaattagatttttgcttataatagtgac 14177932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 16121050 - 16121098
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    |||||||||||||| |||||||||| |  ||||||| ||||||||||||    
T  16121050 atcatttatttaatgaatctaaaaagttgatttttgcttataatagtga 16121098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 17153550 - 17153442
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||  |||  | |||||||  | |||||| ||| ||| ||||||||   ||    
T  17153550 ttataaacaaaaatctatattttaaattcattcgttaaatgatgtatgtgatgtataataaagatcatacacatcattaattgaatgaatctaaattgta 17153451  T
Q  220 catttttgt 228  Q
    |||||||||    
T  17153450 catttttgt 17153442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 694333 - 694207
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatgatagatacaatagatcatgtatatcatttatttaataaatctaaaaaata 219  Q
    ||||||||||||||| | ||||||  || |||| |||||| |||||| || |  |||  | ||||||| || || ||| ||| ||||||| |||||  ||    
T  694333 ttataaacaaaaatcaacattttaggtttatttaataaattatgtatgtggtctataataaagatcatatacataattaattgaataaatttaaaattta 694234  T
Q  220 catttttgtttataatagtgactgaaa 246  Q
     ||||||||||||||||||||| ||||    
T  694233 tatttttgtttataatagtgaccgaaa 694207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 4745401 - 4745463
Alignment:
Q  197 ttatttaataaatctaaaaaatacatttttgtttataatagtgactgaaatgtgtaaatcatt 259  Q
    ||||| |||||||| |||| ||| ||||||  |||||||||| ||||||| ||||||||||||    
T  4745401 ttattcaataaatcaaaaatataaatttttacttataatagtaactgaaaagtgtaaatcatt 4745463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 27895952 - 27895903
Alignment:
Q  192 atcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    |||||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27895952 atcatttattaaatgaatctaaaaaatgaacttttgtttataatagtgac 27895903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 42425332 - 42425377
Alignment:
Q  195 atttatttaataaatctaaaaaatacatttttgtttataatagtga 240  Q
    ||||||| ||||||||||| |||||  |||||||||||||||||||    
T  42425332 atttattaaataaatctaacaaataattttttgtttataatagtga 42425377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 71325 - 71265
Alignment:
Q  181 agatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||| || |||||| ||| ||| ||||||||| ||| ||||||| |||||||||||||    
T  71325 agatcatatacatcattaattgaatgaatctaaaatatagatttttgcttataatagtgac 71265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 11607376 - 11607420
Alignment:
Q  197 ttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  11607376 ttattgaataaatctaacaaataaatttttgtttataattgtgac 11607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 25713780 - 25713832
Alignment:
Q  189 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 241  Q
    ||||||||||||| ||| ||||||||||||  | |||||||||||||| ||||    
T  25713780 tatatcatttattgaatgaatctaaaaaatcaacttttgtttataataatgac 25713832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 32398130 - 32398082
Alignment:
Q  120 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatat 168  Q
    ||||||||||||||| ||||||||||||||||  || ||| ||||||||    
T  32398130 ttataaacaaaaatctatattttaaattcattcaattaatgatgtatat 32398082  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 42832 - 42774
Alignment:
Q  178 aatagatcatgtatatcatttatttaataaatctaaaaaatacatttttgtttataata 236  Q
    |||||||||  ||||||||||||| |||||||||||||| |  ||||||| ||||||||    
T  42832 aatagatcaaatatatcatttattgaataaatctaaaaagttgatttttgattataata 42774  T

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