View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_3 (Length: 766)
Name: NF20775_low_3
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_3 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 19 - 759
Target Start/End: Original strand, 5745717 - 5746457
Alignment:
| Q |
19 |
atttctggtgcatttcttcatcccctatgtgttgtttatgtggccccttttcacgcagtggtggtgcgacgagactatgtctccgcaccaccttctttag |
118 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
5745717 |
atttgtggtgcgtttcttcatcccctatgtgttgtttatgtggccccttttcatgtagtggtgatgcgacgagactatgtctccgcaccaccttcttcag |
5745816 |
T |
|
| Q |
119 |
cccatctgggtcattttcctgtccgttgttgtgatttccggtccggtgttcatttttattttgctacattctgttatagatatgtttccatatggtgatg |
218 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5745817 |
cccatctgggtcatttttttgtccgttgtcgtgatttccggtccggtgttcatttttattttgctacattctgttatagatatgtttccttatggtgatg |
5745916 |
T |
|
| Q |
219 |
ttcacgttttgttggaggggatgtggggtggtcctggtgaggaggtctcgagttatggtgaggaagtggtgagagtgagtgtcgtcgtcggcaatggcaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5745917 |
ttcacgttttgttggaggggatgtggggtggtcctggtgaggaggtctcgagttatggtgaggaagtggtgagagtgagtgtcgtcgtcggcaatggtag |
5746016 |
T |
|
| Q |
319 |
cggagattgtggggaaaggtggttgctgctgtggtgggtcgtctttgaggagtcggtttgtcatgttttctttggcgattttcccccggccatttacgtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5746017 |
cggagattgtggggaaaggtggttgctgctgtggtgggtcgtctttgaggagtcggtttgtcatgttttctttggcgatttttccccggccatttacgtg |
5746116 |
T |
|
| Q |
419 |
gtttatggttgtgttgatgattttgtggtggtgatgtatgggtacgttgtggtgtatcacaggatggtcatagttggcgttggttttgttgtggtggtga |
518 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5746117 |
gtttatggttgtgttggtgattttgtggtggtgatgtatgggtacgttgtggtgtctcacaggatgatcatagttggcgttggttttgttgtggtggtga |
5746216 |
T |
|
| Q |
519 |
tagttgtgttgcgagatggttgggggaggaagtgcaggtgttagattgagtggtgatttatggtggcggtagtggtgtggtctggatggggtggtcgtgg |
618 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5746217 |
tagttgtgttgtgagatggttgggggaggaagtgcaggtgttagattgagtggtgatttatggtggcggtagcggtgtggtctggatggggtggtcgtgg |
5746316 |
T |
|
| Q |
619 |
ataatttgaactcggatctattagaacacgcagtggacaaaaggtgattttgagggggtgtagacgttgtttaggtagggaggtgatgtgtaggtggata |
718 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5746317 |
ataatttggactcagatctatcagaacacgcggtggacaaaaggtgatttagagggggtgtagacgttgtttaggtagggaggtgatgtgtaggtggata |
5746416 |
T |
|
| Q |
719 |
atggtgaactctttgtgtttctgttgttgaccgcctctgtg |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5746417 |
atggtgaactctttgtgtttctgttgttgatcgcctttgtg |
5746457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 13033502 - 13033433
Alignment:
| Q |
75 |
agtggtggtgcgacgagactatgtctccgcaccaccttctttag-cccatctgggtcatt-ttcctgtcc |
142 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||| || |||||||||||| || ||||||||| |
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| T |
13033502 |
agtggtggtacgacgagactaagtctccgcaccaccgtcttcagccccatctgggtcgttgttcctgtcc |
13033433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 450
Target Start/End: Complemental strand, 22145 - 21747
Alignment:
| Q |
31 |
tttcttcatcccctatgtgttgtttatgtggccccttttcacgcagtggtggtgcgacgagactatgtctccgcaccaccttctttagcccatctgggtc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| |
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|
| T |
22145 |
tttcttcatcccctatgtgttgtttatgtggccccttttcacacagtggtggtgcgacgagactatgtctctgcaccaccttcttcagctcatctgggtc |
22046 |
T |
|
| Q |
131 |
attttcctgtccgttgttgtgatttccggtccggtgttcatttttattttgctacattctgttatagatatgtttccatatggtgatgttcacgttttgt |
230 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
22045 |
cttttcctgtccgttgtcgtgatttccggtccagtgttcatctttattttgctacattctgttatagatatgtttccatatggtgatgttcatgttttgt |
21946 |
T |
|
| Q |
231 |
tggaggggatgtggggtggtcctggtgaggaggtctcgagttatggtgaggaagtggtgagagtgagtgtcgtcgtcggcaatggcaacggagattgtgg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
21945 |
tggaggggatgtggggtggtcctggtga---------------------ggaagtggtgagagtgagtgtcgtcctcggcaatggcagcggagattgtgg |
21867 |
T |
|
| Q |
331 |
ggaaaggtggttgctgctgtggtgggtcgtctttgaggagtcggtttgtcatgttttctttggcgattttcccccggccatttacgtggtttatggttgt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
21866 |
ggaaaggtggttgctgctgtggtgggtcgtctttgaggagttggtttgtcatgttttctttggcgatttttccccggccatttacgtggtttatggttgt |
21767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 436 - 733
Target Start/End: Complemental strand, 1820674 - 1820378
Alignment:
| Q |
436 |
tgattttgtggtggtgatgtatgggtacgttgtggtgtatcacaggatggtcatagttggcgttggttttgttgtggtggtgatagttgtgttgcgagat |
535 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| ||||||| |||||| || || |||| |||| || |||||||||||||||||||||||||| |
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|
| T |
1820674 |
tgatttggtggtggtgatgtgtgggtacgttgtggtgactcacaggttggtcagagatgacgtttgttt-gtgatggtggtgatagttgtgttgcgagat |
1820576 |
T |
|
| Q |
536 |
ggttgggggaggaagtgcaggtgttagattgagtggtgatttatggtggcggtagtggtgtggtctggatggggtggtcgtggataatttgaactcggat |
635 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||| ||||||||| || ||||||||||||| || |||||||||||||||||||| | |||||||| |
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|
| T |
1820575 |
ggttgggggaggaagtgtaggtgttggtttgagtggtcatttatggtagcagtagtggtgtggtttgaatggggtggtcgtggataatccggactcggat |
1820476 |
T |
|
| Q |
636 |
ctattagaacacgcagtggacaaaaggtgattttgagggggtgtagacgttgtttaggtagggaggtgatgtgtaggtggataatggtgaactctttg |
733 |
Q |
| |
|
|||| ||| | | ||||||| |||||||||| ||| ||||| ||||||||||||||| | |||||||| | |||||| || |||| | ||||||| |
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|
| T |
1820475 |
ctatcgaaactcacggtggacataaggtgatttagagcaggtgtggacgttgtttaggtatgtaggtgatgggaaggtggttagtggttagctctttg |
1820378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 623
Target Start/End: Complemental strand, 31503849 - 31503755
Alignment:
| Q |
528 |
tgcgagatggttgggggaggaagtgcaggtgttagattgagtggtgatttatggtggcggtagtggtgtggtctggatggggtggtcgtggataat |
623 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| || |||||||||| |||||||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
31503849 |
tgcgagatggttaggggagatagtggaggtgtaagtttgagtggtggtttatggtaattgtagtggcgtggt-tggaaggggtggtcgtggataat |
31503755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 824571 - 824529
Alignment:
| Q |
73 |
gcagtggtggtgcgacgagactatgtctccgcaccaccttctt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
824571 |
gcagtggtggtgcgacgagacttcgtctccgcaccaccttctt |
824529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 625
Target Start/End: Complemental strand, 823969 - 823935
Alignment:
| Q |
591 |
tggtgtggtctggatggggtggtcgtggataattt |
625 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
823969 |
tggtgtggtttggatggggtggtcgtggataattt |
823935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 7393244 - 7393210
Alignment:
| Q |
76 |
gtggtggtgcgacgagactatgtctccgcaccacc |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
7393244 |
gtggtggtgcgacgagactacgtctccgcaccacc |
7393210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 7872980 - 7873022
Alignment:
| Q |
73 |
gcagtggtggtgcgacgagactatgtctccgcaccaccttctt |
115 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7872980 |
gcagcggtggtgcgacgagacttcgtctccgcaccaccttctt |
7873022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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