View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_30 (Length: 350)
Name: NF20775_low_30
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 40088077 - 40087754
Alignment:
| Q |
12 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
111 |
Q |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
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| Q |
112 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
211 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatcttt |
40087879 |
T |
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| Q |
212 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgatgtttatttgctcaagtaatccagtcttagacaatatat |
311 |
Q |
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| T |
40087878 |
caaatttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgatatttatttgctcaagtaatccagtctttgacaatatat |
40087779 |
T |
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| Q |
312 |
catccttcgaaatacccacaggttc |
336 |
Q |
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| T |
40087778 |
catccttcgaaatacccacaggttc |
40087754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 45 - 336
Target Start/End: Complemental strand, 40062198 - 40061907
Alignment:
| Q |
45 |
aattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaac |
144 |
Q |
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| T |
40062198 |
aattacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatcatccttaagatcaac |
40062099 |
T |
|
| Q |
145 |
gcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtac |
244 |
Q |
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| T |
40062098 |
gcttcaaaagaatataatagaagtgttatcgagaagtacagaatcatcgttcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtac |
40061999 |
T |
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| Q |
245 |
cacaagtagtcacttctatcagctgtgatgtttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
336 |
Q |
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| T |
40061998 |
cacaagtagtcacttctatcagcggtgatatttatttgctcaagtaatccagtttttgaaaatatatcatccttcgaaatacccacaggttc |
40061907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 40080330 - 40080042
Alignment:
| Q |
47 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
146 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
|
| Q |
147 |
ttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtacca |
246 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtacataatcatcggtcaaagcaaatatctttcaaatttggaggcttgtgtaccttaatgagtacca |
40080132 |
T |
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| Q |
247 |
caagtagtcacttctatcagctgtgatgtttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
336 |
Q |
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| T |
40080131 |
caaataatcacttctatcagctgtggtatttatttgctcaagtaatccagtcttagacaatatatcatccttcgaaatacccacaggttc |
40080042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 22013633 - 22013690
Alignment:
| Q |
228 |
tataccttaatgagtaccacaagtagtcacttctatcagctgtgatgtttatttgctc |
285 |
Q |
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||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
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| T |
22013633 |
tataccttaatgagtaccataagtagtcacttctatcagccgtcgtgtttatttgctc |
22013690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
47 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
118 |
Q |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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