View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_38 (Length: 314)
Name: NF20775_low_38
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 42937018 - 42936738
Alignment:
| Q |
30 |
acacactcttatatctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacg |
129 |
Q |
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| T |
42937018 |
acacactcttatatctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacg |
42936919 |
T |
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| Q |
130 |
agattggcgccggtaacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatccatagacttggatcgttcgcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936918 |
agattggcgccggtaacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatccatagacttggatcgttcgcg |
42936819 |
T |
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| Q |
230 |
ccccgaccttgacgatgttagacgtgaagcaaagacattatcacttctttcccaccccaacatcctcaaagctctctgttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42936818 |
ccccgaccttgacgatgttagacgtgaagcaaagacattatcacttctttcccaccccaacatcctcaaagctcactgttc |
42936738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42937061 - 42937027
Alignment:
| Q |
1 |
tattttcaaacaaccattttcaacctctaacacac |
35 |
Q |
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| T |
42937061 |
tattttcaaacaaccattttcaacctctaacacac |
42937027 |
T |
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