View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_39 (Length: 314)

Name: NF20775_low_39
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_39
NF20775_low_39
[»] chr1 (2 HSPs)
chr1 (1-298)||(29049332-29049630)
chr1 (6-298)||(29052598-29052889)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 29049630 - 29049332
Alignment:
Q  1 tcatccaaccattgatattaacatctgcggcagtacctgcctatctaaactccaattccaagccacaacgtacctgaaaatgccttccttttgaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  29049630 tcatccaaccattgatattaacatctgcggcagtacctgcctgtctaaactgcaattccaagacacaacgtacctgaaaatgccttccttttgaatgtga 29049531  T
Q  101 aactgcttgttcatggtggccactatattcaaagtggttagaaactgacaagtagaaaaagaaacattca-tttgttttatgatgaccttacttacatga 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29049530 aactgcttgttcatggtggccactatattcaaagtgattagaaactgacaagtagaaaaagaaacattcatttttttttatgatgaccttacttacatga 29049431  T
Q  200 gaaccatgcagactataacttcatagaaggagataaaacattataaagataaataaataccttggattctatttccaaatattcatcttcaagcttttt 298  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29049430 gaaccatgcagattataacctcatagaaggagataaaacattataaagataaataaataccttggattctatttccaaatattcatcttcaagcttttt 29049332  T

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Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 29052889 - 29052598
Alignment:
Q  6 caaccattgatattaacatctgcggcagtacctgcctatctaaactccaattccaagccacaacgtacctgaaaatgccttccttttgaatgtgaaactg 105  Q
    |||| ||||||||| |||| ||||| |||||||||||  ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||    
T  29052889 caacgattgatattgacatatgcggtagtacctgcctgcctaaaatccaattccaagacacagcgtacctgaaaatgccttccttttgaatgtggaactg 29052790  T
Q  106 cttgttcatggtggccactatattcaaagtggttagaaactgacaagtagaaaaagaaacattcatttgttttatgatgaccttacttacatgagaacca 205  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29052789 cttgttcatggtggccactatattcaaagtggttagaaactaacaagtagaaaaagaaacattcatttgttttatgatgaccttac-tacatgagaacca 29052691  T
Q  206 tgcagactataacttcatagaaggagataaaacattataaagataaataaataccttggattctatttccaaatattcatcttcaagcttttt 298  Q
    || ||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  29052690 tgtagattataacttcatataaggagataaaatattataaagataaataaatactttggattctatttccaaatatttatcttcaagcttttt 29052598  T

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