View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_4 (Length: 712)
Name: NF20775_low_4
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Complemental strand, 31845003 - 31844406
Alignment:
| Q |
18 |
ccaaaattagtaagtaatgaccaaactcacacaataggattccctctttttctattataataactctttattatttctatcatactaaattgtctcatga |
117 |
Q |
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| T |
31845003 |
ccaaatttagtaaataatgaccaaactcacacaataggattccctctctttctattataataactctttattatttctatcatactaaattgtctcatga |
31844904 |
T |
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| Q |
118 |
tatatactcaaatatccctattaccctcttcatcatcacattcacatcgtttttcttctcaagctatnnnnnnnnnnnnnnnnnnnttgattt--gagta |
215 |
Q |
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| T |
31844903 |
tatatactcaaatatccctactaccctcttcatcatcacattcacaccgtttttcttctcaagccattctctctccctctctctctttgatttttgagta |
31844804 |
T |
|
| Q |
216 |
attaagatagtttctttttgagacattttgtnnnnnnngagtgcatgatgaagaggaacaatatgaacacaaatttgaaaggctataatcacacttatta |
315 |
Q |
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| T |
31844803 |
attaagatagtttctttttgagacattttgtaaaaaaagagtgcatgatgaagaggaacaatatgaacacaaacttgaaaggctataatcacacttatta |
31844704 |
T |
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| Q |
316 |
caacaatccaatcatcaccaacaaaagtgataataataatggatcatcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatac |
415 |
Q |
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| T |
31844703 |
caacaatccaatcatcaccaacaaaagtgataataataatggatcatcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatac |
31844604 |
T |
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| Q |
416 |
acatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcac |
515 |
Q |
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| T |
31844603 |
acatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcac |
31844504 |
T |
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| Q |
516 |
caccaacaactcatgaaccagctcaa---attcaaggttcttctatgcttaatcttaaccttaataaccctactatcactactactaaccctaattta |
610 |
Q |
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| T |
31844503 |
caccaacaactcatgaaccagctcaacttaatgaaggttcttctatgcttaatcttaaccttaataaccctactatcactactactaaccctaattta |
31844406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 397 - 498
Target Start/End: Complemental strand, 6889922 - 6889821
Alignment:
| Q |
397 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagca |
496 |
Q |
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| T |
6889922 |
atggccaccaagatcatattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagca |
6889823 |
T |
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| Q |
497 |
ag |
498 |
Q |
| |
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|| |
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| T |
6889822 |
ag |
6889821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 501
Target Start/End: Original strand, 34522585 - 34522688
Alignment:
| Q |
398 |
tggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaa |
497 |
Q |
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||||||||||||| || |||||| |||||||| || |||||||| || |||||||| ||||| |||||||||||| ||||||| || |||||||| | |
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| T |
34522585 |
tggccaccaagattttattcatgtaacttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagcta |
34522684 |
T |
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| Q |
498 |
ggct |
501 |
Q |
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|||| |
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| T |
34522685 |
ggct |
34522688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 480
Target Start/End: Original strand, 4830959 - 4831043
Alignment:
| Q |
396 |
catggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttca |
480 |
Q |
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| T |
4830959 |
catggccaccaaggtcctacacctgtaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttca |
4831043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 30726717 - 30726619
Alignment:
| Q |
397 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagc |
495 |
Q |
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|||||| |||||||| ||| ||||| ||| |||| || |||||||| || |||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
30726717 |
atggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc |
30726619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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