View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_43 (Length: 296)
Name: NF20775_low_43
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 46639619 - 46639483
Alignment:
| Q |
19 |
catgtatgatgttcaatatccatttattacgagatggatattctagaaacgtcaagctaccattcgatcaatgttgtataaatgaatggaagaccaacac |
118 |
Q |
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| T |
46639619 |
catgtatgatgttcaatatccatttattatgagatggatattctagaaacgtcaagctaccattcaatcaatgttgtataaatgaatggaagaccaacac |
46639520 |
T |
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| Q |
119 |
ataaaaacaaaatttctaacattattccacttggacg |
155 |
Q |
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| T |
46639519 |
ataaaaacaaaatttctaacattcttccacttggacg |
46639483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 46620829 - 46620699
Alignment:
| Q |
25 |
tgatgttcaatatccatttattacgagatgg-atattctagaaacgtcaagctaccattcgatcaatgttgtataaatgaatggaagaccaacacataaa |
123 |
Q |
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| T |
46620829 |
tgatcttcaatatccattcattactagatgggacattttagaaacgtcaagatacc-ttcaatcaacgttgtataaatgaatggaggaccaacacataaa |
46620731 |
T |
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| Q |
124 |
aacaaaatttctaacattattccacttggacg |
155 |
Q |
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| T |
46620730 |
aacaaaattcctaacattcttccacttggacg |
46620699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 46620652 - 46620591
Alignment:
| Q |
235 |
atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaac |
296 |
Q |
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| T |
46620652 |
atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaac |
46620591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 46639403 - 46639346
Alignment:
| Q |
235 |
atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtagga |
292 |
Q |
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| T |
46639403 |
atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtagga |
46639346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 46172611 - 46172659
Alignment:
| Q |
248 |
ctagtcatctggcagccttagaacacaattt-aaagtcaggtaggagaa |
295 |
Q |
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| T |
46172611 |
ctagtcatctagcagccttagaacacaatttgcaagtcaggcaggagaa |
46172659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 18373407 - 18373540
Alignment:
| Q |
23 |
tatgatgttcaatatccatttattacgagatggatattctagaaacgtcaagctaccattcgatcaatgttgtataaatgaatggaagaccaa-cacata |
121 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| |
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| T |
18373407 |
tatgatgttcaatattcattcattacgagatggatattctagaaacgtcaagataccattcaatcaatgttgtataaatgaatggaggaccaaccacata |
18373506 |
T |
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| Q |
122 |
aaaacaaaatttctaacattattccacttggacg |
155 |
Q |
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| T |
18373507 |
aaaacaaaatttctaatattctttcacttggacg |
18373540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 18373631 - 18373685
Alignment:
| Q |
241 |
aatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaa |
295 |
Q |
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| T |
18373631 |
aatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaagagaa |
18373685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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