View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_46 (Length: 288)
Name: NF20775_low_46
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 31709264 - 31708994
Alignment:
| Q |
1 |
gtaacaatcaatctagtatccgtatttttgtttgattacattatacactcatcgtccatttagcgatgtaatggttaattcatgatttgaactaatttca |
100 |
Q |
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| T |
31709264 |
gtaacaatcaatctagtatccgtatttttgttt----acattatacactcatcgtccatttagcgatgtaatggttaattcatcatttgaactaatttca |
31709169 |
T |
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| Q |
101 |
ttttgatttggcgactcttcgtgagaagataccttcctttgacagaaaccaggtgctttaggctcaaccaattccatatcactacctaacatttgaataa |
200 |
Q |
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| T |
31709168 |
ttttgatttggtgactcttcgtcagaagataccttcctttgacagaaaccaggtgctttaggctcaaccaattccatatcactacctaacatttgaataa |
31709069 |
T |
|
| Q |
201 |
catatgtcattgtaggtctgtcctccgggtattgttgcacacacaacagactcacatgtatgcatcgtaatacct |
275 |
Q |
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| T |
31709068 |
cagatgtcattgtaggtctgtcctccgggtattgttgcacacacaacagactcacatgtatgcatcttaatacct |
31708994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 31698110 - 31697903
Alignment:
| Q |
49 |
tcatcgtccatttagcgatgtaatggttaattcatgatttgaactaatttcattttgatttggcgactcttcgtgagaagataccttcctttgacagaaa |
148 |
Q |
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|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||| | |||| || |||||| || ||||| |
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| T |
31698110 |
tcatcgtccatttaacgatgtaatggttaattcttcatttgaactaatttcattttgatttgg------ttcatcagaa---actttccttggaaagaaa |
31698020 |
T |
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| Q |
149 |
ccaggtgctttaggctcaaccaattccatatcactacctaacatttgaataacatatgtcattgtaggtctgtcctccgggtattgttgcacacacaaca |
248 |
Q |
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| T |
31698019 |
ccaggttctttaggttcaaccagttccatttcactacctagcatttgaaccacagatgtcattgtaggcctatcctctgggtattgttgcacacacaaca |
31697920 |
T |
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| Q |
249 |
gactcacatgtatgcat |
265 |
Q |
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|||||||||| |||||| |
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| T |
31697919 |
gactcacatggatgcat |
31697903 |
T |
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