View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20775_low_47 (Length: 284)
Name: NF20775_low_47
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_47 |
 | |
|
| [»] scaffold0026 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0026 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 100380 - 100216
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaat----tcaatcatgagtga---tactca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||| |
|
|
| T |
100380 |
atttgaatcttttaagaatgaaaacatttgtttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactactca |
100281 |
T |
|
| Q |
111 |
attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagag |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
100280 |
attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagag |
100216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 100053 - 100167
Alignment:
| Q |
170 |
gaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctgggg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
100053 |
gaagagaacaagaaaactatggagaaaagtgttggtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaagaaaaattctgggg |
100152 |
T |
|
| Q |
270 |
acctgagtctcaagt |
284 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
100153 |
acctgagtctcaagt |
100167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 102457 - 102389
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca |
86 |
Q |
| |
|
|||||||||| |||||||||| || | |||||| ||||||||||||||||| | ||||||||| |||| |
|
|
| T |
102457 |
atttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtca |
102389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 102195 - 102261
Alignment:
| Q |
218 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagt |
284 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||| || || | || ||||||||||||| |
|
|
| T |
102195 |
caagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagt |
102261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 25849807 - 25849976
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaattcaat----catgagtgatact----- |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
25849807 |
atttgaatcttttaagaatgaaaacatttgcttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactatact |
25849906 |
T |
|
| Q |
109 |
---caattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagag |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25849907 |
actcaattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagag |
25849976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 25850140 - 25850026
Alignment:
| Q |
170 |
gaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctgggg |
269 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | | |
|
|
| T |
25850140 |
gaagagaacaagaaaactgtggatggaagtgttgatttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtg |
25850041 |
T |
|
| Q |
270 |
acctgagtctcaagt |
284 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25850040 |
acctgagtctcaagt |
25850026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25847830 - 25847898
Alignment:
| Q |
18 |
atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca |
86 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||||| || ||||||||| |||| |
|
|
| T |
25847830 |
atttgaatcttttaagaatgagaacaattgcttagctggtggagcaatctcaaggattctaacatgtca |
25847898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 25845847 - 25845784
Alignment:
| Q |
203 |
ggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctg |
266 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
25845847 |
ggtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaagaattctg |
25845784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 25848104 - 25848038
Alignment:
| Q |
218 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagt |
284 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||| | || ||||| || ||||||||||||| |
|
|
| T |
25848104 |
caagaagctctagtggtgaagtcatggaatgcaatcaagtacaactctggagatctgagtctcaagt |
25848038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University