View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_48 (Length: 273)
Name: NF20775_low_48
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 35394239 - 35394460
Alignment:
| Q |
26 |
atacaacttctagtaataagttctaaattcgtgtcactattgcactattctcacagctctcaagtctcaagtaactcctaaaatccggtgacaactatag |
125 |
Q |
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| T |
35394239 |
atacaacttatagtaataagttctaaattcgtgtcactattgcactattctcacagctctcaagtctcaagtaactcctacaatccggtgacaactatag |
35394338 |
T |
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| Q |
126 |
ttgaggaagcctctccactccgttgaatttgatttcgtcatttcgatattaaagatcaagaccatactcatggatattcaaacctatcaatatatagcaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35394339 |
ttgaggaagcctctccactccgttgaatttgatttcgtcatttcgatattaaagatcaagaccatactcatggatattcaaacctatcaatatatagcaa |
35394438 |
T |
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| Q |
226 |
gttccatttgcataggtatata |
247 |
Q |
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|||||||||||||||||||||| |
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| T |
35394439 |
gttccatttgcataggtatata |
35394460 |
T |
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