View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_5 (Length: 710)

Name: NF20775_low_5
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_5
NF20775_low_5
[»] chr4 (1 HSPs)
chr4 (19-659)||(38196787-38197425)


Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 38196787 - 38197425
Alignment:
Q  19 atcaacgatctaagttaacaacttgtatgttagaagacatcaagaaagggaagctatgtggagactcttgacagaaaggttattctcttttactcttgtt 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38196787 atcaacgatctaagttaacaacttgtatattagaagacatcaagaaagggaagctatgtggagactcttgacagaaaggtttttctcttttactcttgtt 38196886  T
Q  119 ttgcccattagcattacaatgtaatcaaaggctgatgcaggtgtatatagcggaaaatagagctagtattacaccatatgaacatgcaaagcacatgaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  38196887 ttgcccattagcattacaatgtaatcaaaggctgatgcaggtgtatatagcggaaaatagagctagtattacacggtatgaacatgcaaagcacatgaat 38196986  T
Q  219 tgatttacttttagaattttccgagtgataaagcaaagaaataaaacattttacttctatcaataaacaatatttcaaagaaatttccttggcaatgcac 318  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38196987 tgatttacttttagaattgtccgagtgataaagcaaagaaataaaacattttacttctattaataaacaatatttcaaagaaatttccttggcaatgcac 38197086  T
Q  319 cttcctcattatcgtagcctgcaaattcatgcttttcattcaacatcaggcagaagatatctttactagagaagaaaaatatagcgaggatggaaattac 418  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38197087 cttcctcattatcttagcctgcaaattcatgcttttcattcaacatcaggcagaagatatctttactagagaagaaaaatatagcgaggatggaaattac 38197186  T
Q  419 aacgaaaccggtgatgacaacaatgaagaaaaatctgaaggagatgatgatgtgattgatgatcaacaagaggaaggagagtacttactaggagacgacg 518  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  38197187 aatgaaaccggtgatgacaacaatgaagaaaaatctgaaggagatgatgatgtgattgaagatcaacaagaggaaggagagtacttactaggagatgacg 38197286  T
Q  519 gtcctactgcagttgcagaagtatacattttcagtttatctcgtgggaaattgtcgtatatacattctttgcaatgtcataaaaaactatagttatactt 618  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  38197287 gtcctactgcagttgcagaagtatacattttcagtttatcttgtgggaaattgtcgtatatacattctttgcaatgtcatcaaaaac--tagttatactt 38197384  T
Q  619 acttgggaatacttgacactttcaaaatacgttagataaca 659  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  38197385 acttgggaatacttgacactttcaaaatacattagataaca 38197425  T

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