View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_51 (Length: 254)
Name: NF20775_low_51
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 12105966 - 12106190
Alignment:
| Q |
12 |
agagatgggtttatgaattggcttcgcagcgaatttgcagctgcgaatgcgattatagattgtttgtgtcagcatttaggtgttgctggtgagagtggtg |
111 |
Q |
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| T |
12105966 |
agagatgggtttatgaattggcttcgcagcgaatttgcagctgcgaatgcgattatagattgtttgtgtcagcatttaggtgttgctggtgagagtggtg |
12106065 |
T |
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| Q |
112 |
agtatgatcatgttgttggtgcaattcagcagaggagaattaattggaatcaagtgcttcttatgcagcagtactattcggttaatgagttggagtatgc |
211 |
Q |
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| T |
12106066 |
agtatgatcatgttgttggtgcaattcagcagaggagaattaattggaatcaagtgcttcttatgcagcagtactattcggttaatgaggtggagtatgc |
12106165 |
T |
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| Q |
212 |
gttacagcaggtggcgtggcggaag |
236 |
Q |
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| T |
12106166 |
gttacagcaggtggcgtggcggaag |
12106190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 12089329 - 12089547
Alignment:
| Q |
12 |
agagatgggtttatgaattggcttcgcagcgaatttgcagctgcgaatgcgattatagattgtttgtgtcagcatttaggtgttgctggtgagagtggtg |
111 |
Q |
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||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12089329 |
agagatgggtttatgaattggattcgtagcgaattcgctgctgcgaatgctattattgattgtttgtgtcagcatttaggtgttattggtgagagtggtg |
12089428 |
T |
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| Q |
112 |
agtatgatcatgttgttggtgcaattcagcagaggagaattaattggaatcaagtgcttcttatgcagcagtactattcggttaatgagttggagtatgc |
211 |
Q |
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| T |
12089429 |
agtatgatcatgttgttggtgcaattcagcagaggagggttaattggaatcaagtgctgcttatgcagcagtatttttcggttaacgaggttgcatatgc |
12089528 |
T |
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| Q |
212 |
gttacagcaggtggcgtgg |
230 |
Q |
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||| ||||||||||||||| |
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| T |
12089529 |
gttgcagcaggtggcgtgg |
12089547 |
T |
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