View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_53 (Length: 251)
Name: NF20775_low_53
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_53 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 9706162 - 9706402
Alignment:
| Q |
11 |
caaaggcataagctacatatctctgttgattgatataataaatacaatcaacagtttgccacagcagacctaataacttcaaaatactcatgcatataca |
110 |
Q |
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| T |
9706162 |
caaaggcataagctacatatcgctgttgattgatataataaatacaatcaacagtttgccacagcagacctaataacttcaaaatactcatgcatataca |
9706261 |
T |
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| Q |
111 |
aaagagtatactccctccgatcttaaatataagtaaaaaggtacatatatttggtctaaatttgaaccaaatatatgtaccgttttgtttatattcaaga |
210 |
Q |
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| T |
9706262 |
aaagagtatactccctccgatcttaaatataagtaaaaaggtacatatatttggtctaaatttgaaccaaatatatgtaccgttttgtttatattcaaga |
9706361 |
T |
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| Q |
211 |
cgggacggaatatgtacacgattcaattactaatgtgctaa |
251 |
Q |
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| T |
9706362 |
cgggacggaatatgtacacgattcagttactaatgtgctaa |
9706402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 38960206 - 38960134
Alignment:
| Q |
133 |
ttaaatataagtaaaaaggtacatatatttggtctaaatttgaaccaaatatatgtaccgttttgtttatatt |
205 |
Q |
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| T |
38960206 |
ttaaatataagtagaaatgtgcatatattttgtctaaatttaaaacaaatacatgtattattttgtttatatt |
38960134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 9706361 - 9706282
Alignment:
| Q |
131 |
tcttaaatataagtaaaaaggtacatatatttggtctaaatttgaaccaaatatatgtaccgttttgtttatattcaaga |
210 |
Q |
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| T |
9706361 |
tcttgaatataaacaaaacggtacatatatttggttcaaatttagaccaaatatatgtacctttttacttatatttaaga |
9706282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 44696340 - 44696289
Alignment:
| Q |
138 |
tataagtaaaaaggtacatatatttggtctaaatttgaaccaaatatatgta |
189 |
Q |
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| T |
44696340 |
tataagtaaaaaggtacatatatttgatcgtaatttgaactaaacatatgta |
44696289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 43752157 - 43752218
Alignment:
| Q |
121 |
ctccctccgatcttaaatataagtaaaaaggtacatatatttggtctaaatttgaaccaaata |
183 |
Q |
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| T |
43752157 |
ctccctctgatcttaaatataagcaaaaaagtatatgtattt-gtcgaaatttgaaccaaata |
43752218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 38054576 - 38054613
Alignment:
| Q |
125 |
ctccgatcttaaatataagtaaaaaggtacatatattt |
162 |
Q |
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| T |
38054576 |
ctccgatcttaaatataagtaaaaaagtacatgtattt |
38054613 |
T |
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