View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_54 (Length: 250)
Name: NF20775_low_54
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4385920 - 4385683
Alignment:
| Q |
1 |
atacaataatattaataataaacgatattaatcatattacttgtgaattagtctgatagttttaagaggnnnnnnn-atgactgtggcctgaccttttaa |
99 |
Q |
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| T |
4385920 |
atacaataatattaataataaacgatatcagtcatattacttgtaaattagtctgatagttttaagaggttttttttatgattgtggtctgaccttttta |
4385821 |
T |
|
| Q |
100 |
gttaaataaacttttaaaaaggcataagccttctctacttnnnnnnnngtcactgtagatcggtctgacctcttaccctccctgattggtgggtgttgtt |
199 |
Q |
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| T |
4385820 |
gttaaataaccttttaaaaaagcataagccttctctacttaaaaaaa-gtccttgtaaatcggtctgacctcttaccatccctgattgctgggtgttgtt |
4385722 |
T |
|
| Q |
200 |
gttgcaatgacatgtccattgagttcccaaccctgccta |
238 |
Q |
| |
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| T |
4385721 |
gttgcaatgacatgtccattgagttcccaaccctgccta |
4385683 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 3022911 - 3022965
Alignment:
| Q |
82 |
tgtggcctgaccttttaagttaaataaacttttaaaaaggcataagccttctcta |
136 |
Q |
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| T |
3022911 |
tgtggcctgaccttttaagttaaatatacttttaaaaaagtttaggccttctcta |
3022965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 31587710 - 31587660
Alignment:
| Q |
86 |
gcctgaccttttaagttaaataaacttttaaaaaggcataagccttctcta |
136 |
Q |
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| T |
31587710 |
gcctgaccttttaagctaaataagcttttaaaaaagcatagaccttctcta |
31587660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 16998278 - 16998315
Alignment:
| Q |
82 |
tgtggcctgaccttttaagttaaataaacttttaaaaa |
119 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||| |
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| T |
16998278 |
tgtggcctgacctattaagttaaatagacttttaaaaa |
16998315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 5712329 - 5712292
Alignment:
| Q |
82 |
tgtggcctgaccttttaagttaaataaacttttaaaaa |
119 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
5712329 |
tgtggtctgaccttttaaattaaataaacttttaaaaa |
5712292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 39848308 - 39848271
Alignment:
| Q |
82 |
tgtggcctgaccttttaagttaaataaacttttaaaaa |
119 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
39848308 |
tgtggcctggccttttaagctaaataaacttttaaaaa |
39848271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 5034389 - 5034441
Alignment:
| Q |
84 |
tggcctgaccttttaagttaaataaacttttaaaaaggcataagccttctcta |
136 |
Q |
| |
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|
| T |
5034389 |
tggcctgaccttttaagttaaataggcttctaaaaaagcctatgccttctcta |
5034441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 4557215 - 4557187
Alignment:
| Q |
92 |
ccttttaagttaaataaacttttaaaaag |
120 |
Q |
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| T |
4557215 |
ccttttaagttaaataaacttttaaaaag |
4557187 |
T |
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