View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_56 (Length: 249)
Name: NF20775_low_56
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26342048 - 26342279
Alignment:
| Q |
1 |
ccccttgacttgatgtacacaatccatcgatggaatgattatggtttttcggattccatcattgtcacgatgtctgccagaaccagagccttaaggggct |
100 |
Q |
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| T |
26342048 |
ccccttgactcgatgtacacaatctatcgatggaatgattatggtttttcagatgtcatcgttgtcacgatgtctgccagaaccagagccttaaggacct |
26342147 |
T |
|
| Q |
101 |
tttggattcataccacacatcaaattttaacagttaaatcgtccattttgtaatcattcaggcatggtctggcatgaaaaactttttcttaactggttgg |
200 |
Q |
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| T |
26342148 |
tttggattcatacaacacatcaaattttgacagttaaatcgtccattttgtaatccttcaggcatggtttggcatgaaaaactttttctgaactggttgg |
26342247 |
T |
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| Q |
201 |
tcgtttcagaccattatctggcggaccacaca |
232 |
Q |
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| T |
26342248 |
tcgtttcagaccattatctggtggaccacaca |
26342279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 26348740 - 26348946
Alignment:
| Q |
15 |
gtacacaatccatcgatggaatgattatggtttttcggattccatcattgtcacgatgtctgccagaaccagagccttaaggggcttttgg-attcatac |
113 |
Q |
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| T |
26348740 |
gtacacattccatcgatgtaatgattatggttttccggatgtcgtt-ttgtcaggatgtctgccaggaccagaacctgaagggccttttgggattcattc |
26348838 |
T |
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| Q |
114 |
cacacatcaaattttaacagttaaatcgtccattttgtaatcattcaggcatggtctggcatgaaaaactttttcttaactggttggtcgtttcagacca |
213 |
Q |
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| T |
26348839 |
cacacatcaaattctgatagttagatcgtccattttgtaatccttcgggcatggtctggccttaaaaactttttcctaagtgcttggtcggttcagacca |
26348938 |
T |
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| Q |
214 |
ttatctgg |
221 |
Q |
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| T |
26348939 |
ttatctgg |
26348946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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