View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_59 (Length: 248)

Name: NF20775_low_59
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_59
NF20775_low_59
[»] scaffold0026 (2 HSPs)
scaffold0026 (18-248)||(100143-100380)
scaffold0026 (18-86)||(102389-102457)
[»] chr4 (3 HSPs)
chr4 (18-248)||(25849807-25850050)
chr4 (18-86)||(25847830-25847898)
chr4 (204-245)||(25848018-25848059)


Alignment Details
Target: scaffold0026 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 100380 - 100143
Alignment:
Q  18 atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaat----tcaatcatgagtga---tactca 110  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    | ||||| ||||||   ||||||    
T  100380 atttgaatcttttaagaatgaaaacatttgtttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactactca 100281  T
Q  111 attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgaaaaatggattaattactgaaatgaaatgcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  100280 attggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgaaaaatggattaattactgaaatgaaatgcct 100181  T
Q  211 tacttcttgaaaaacttgagactcaggtccccagaatt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  100180 tacttcttgaaaaacttgagactcaggtccccagaatt 100143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 102457 - 102389
Alignment:
Q  18 atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca 86  Q
    |||||||||| |||||||||| || | |||||| ||||||||||||||||| |  ||||||||| ||||    
T  102457 atttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtca 102389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 25849807 - 25850050
Alignment:
Q  18 atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtcagaattcaat----catgagtgatact----- 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    || ||||||||||         
T  25849807 atttgaatcttttaagaatgaaaacatttgcttagctggtggagcaatctccagtattctaacaagtcagaattaaataaatcacgagtgatactatact 25849906  T
Q  109 ---caattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttga-aaaatggattaattactgaaatgaa 204  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||  ||||||||    
T  25849907 actcaattggtcaaaaacatgtctagttaacttaccagctgaaaattaattaatataattaacagaagagttgataaatttaattaattaaggaaatgaa 25850006  T
Q  205 atgccttacttcttgaaaaacttgagactcaggtccccagaatt 248  Q
    ||| |||||||| |||||||||||||||||||||| | ||||||    
T  25850007 atgtcttacttcgtgaaaaacttgagactcaggtcacaagaatt 25850050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25847830 - 25847898
Alignment:
Q  18 atttgaatcttttaagaatgaaaacatttgcttggctggtggagcaatctccagtattctaacaagtca 86  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||||||| || ||||||||| ||||    
T  25847830 atttgaatcttttaagaatgagaacaattgcttagctggtggagcaatctcaaggattctaacatgtca 25847898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 25848018 - 25848059
Alignment:
Q  204 aatgccttacttcttgaaaaacttgagactcaggtccccaga 245  Q
    |||| |||||||||||||||||||||||||||| || |||||    
T  25848018 aatgacttacttcttgaaaaacttgagactcagatctccaga 25848059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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