View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_64 (Length: 243)
Name: NF20775_low_64
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1666038 - 1666256
Alignment:
| Q |
1 |
aagttaacatggtttaaaatcgataaaatcggataaactcgtccaaatttgcgaatttaccttttaaaaacacaatttcttttgtttgttttgggacagt |
100 |
Q |
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| T |
1666038 |
aagttaacatggtttaaaatcgataaaatcggataaactcgtccaagtttgcgagtttaccttttaaaaacacaattt-ttttgtttgttttgggacagt |
1666136 |
T |
|
| Q |
101 |
tttcaattaaaattcaattcatttttataggtcaacccaatatcacaatgttatgatcctgcgacacttcnnnnnnncttctcaaaaacatacaacaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
1666137 |
tttcaattaaaattcaattcatttttatagggcaacccaatatcacaatgttatgatcgcgcgacacttctttttttcttctcaaaaacatacaacaaaa |
1666236 |
T |
|
| Q |
201 |
cgttgctcttctctgctcct |
220 |
Q |
| |
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|||||||||||| ||||| |
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| T |
1666237 |
ttttgctcttctcttctcct |
1666256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 27994722 - 27994591
Alignment:
| Q |
89 |
ttttgggacagttttcaattaaaattcaattcatttttataggtcaacccaatatcacaatgttatgatcctgcgacacttcnnnnnnncttctcaaaaa |
188 |
Q |
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| T |
27994722 |
ttttgggccggttttcaattaaaatccaattcatttttaaagcccatcccaatagcacagtgttatgaacgcgcgacgcttcttttcttcttctaaaaaa |
27994623 |
T |
|
| Q |
189 |
catacaacaaaacgttgctcttctctgctcct |
220 |
Q |
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| T |
27994622 |
catacaacacaacattgctcttctcttctcct |
27994591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 1544566 - 1544604
Alignment:
| Q |
87 |
tgttttgggacagttttcaattaaaattcaattcatttt |
125 |
Q |
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| T |
1544566 |
tgttttgggccagttttctattaaaattcaattcatttt |
1544604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 40198707 - 40198653
Alignment:
| Q |
14 |
ttaaaatcgataaaatcggataaactcgtccaaatttgcgaatttaccttttaaa |
68 |
Q |
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||||||||| |||||| || |||||||||||| ||||||| ||||||||||||| |
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| T |
40198707 |
ttaaaatcggtaaaattgggcaaactcgtccaagtttgcgagtttaccttttaaa |
40198653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 26955438 - 26955539
Alignment:
| Q |
24 |
taaaatcggataaactcgtccaaatttgcgaatttaccttttaaaaacacaatttcttttgtttgttttgggacagttttcaattaaaattcaattcatt |
123 |
Q |
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||||||||||||||||||| | | ||||||| ||||||||||||||| ||| ||| |||| |||||| | | || |||||||||||||| ||||||||| |
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| T |
26955438 |
taaaatcggataaactcgttcgagtttgcgagtttaccttttaaaaaaacagtttttttt-tttgttgttgccca-ttttcaattaaaatccaattcatt |
26955535 |
T |
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| Q |
124 |
ttta |
127 |
Q |
| |
|
|||| |
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|
| T |
26955536 |
ttta |
26955539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 2326570 - 2326534
Alignment:
| Q |
184 |
aaaaacatacaacaaaacgttgctcttctctgctcct |
220 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||| |
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| T |
2326570 |
aaaaacatacaacataacgttgctcttctcttctcct |
2326534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 15286455 - 15286399
Alignment:
| Q |
100 |
ttttcaattaaaattcaattcatttttataggtcaacccaatatcacaatgttatga |
156 |
Q |
| |
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|||||||||||||| ||||||||||||| || ||||||||||||| | |||||||| |
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| T |
15286455 |
ttttcaattaaaatccaattcatttttaaagcccaacccaatatcaaagtgttatga |
15286399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 42043533 - 42043580
Alignment:
| Q |
80 |
ttttgtttgttttgggacagttttcaattaaaattcaattcattttta |
127 |
Q |
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|||| ||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
42043533 |
ttttttttgttttgggccggttttcaattaaaatccaattcattttta |
42043580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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