View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_65 (Length: 242)
Name: NF20775_low_65
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 23870823 - 23870607
Alignment:
| Q |
11 |
cagagaagttaagggtaatttagttttcaaacatttcaattatttggaaagcaagaaaagcaacgaattttaatcaagagggatttaattgggagaaggt |
110 |
Q |
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| T |
23870823 |
cagagaagttaagggtaatttagttttcaaacatttcaattatttggaaagcaagaaaagcaacgaattttaatcaagagggatttaattgggagaaggt |
23870724 |
T |
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| Q |
111 |
gatgaaggagtcaaaagttttgtcatggagaattctaagaaccaagcctaaaggatttaattttacattaagtcagtggttgttgaactctttggattgg |
210 |
Q |
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| T |
23870723 |
gatgaaggagtcaaaagttttgtcatggagaattctaagaaccaagcctaaaggatttaattttacattaagtcagtggttgttgaactctttggattgt |
23870624 |
T |
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| Q |
211 |
ttaggggtggataaaag |
227 |
Q |
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| T |
23870623 |
ttaggggtggataaaag |
23870607 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 51397828 - 51397734
Alignment:
| Q |
125 |
aagttttgtcatggagaattctaagaaccaagcctaaaggatttaattttacattaagtcagtggttgttgaactctttggattggttaggggtgg |
220 |
Q |
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| T |
51397828 |
aagttttatcattgagaattttaaaatccaagtctaaaagatttaattttaca-tatgtcaatggttattgaatcctttggattgtttgggggtgg |
51397734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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