View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_66 (Length: 239)

Name: NF20775_low_66
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_66
NF20775_low_66
[»] chr5 (18 HSPs)
chr5 (18-239)||(4385944-4386165)
chr5 (114-224)||(18731126-18731234)
chr5 (93-203)||(2823527-2823637)
chr5 (116-210)||(35412360-35412454)
chr5 (155-208)||(11778635-11778688)
chr5 (106-178)||(14830585-14830657)
chr5 (114-224)||(15577828-15577939)
chr5 (112-190)||(28207364-28207442)
chr5 (114-190)||(6391492-6391568)
chr5 (163-224)||(817844-817904)
chr5 (114-224)||(38876622-38876733)
chr5 (109-224)||(42108511-42108626)
chr5 (113-190)||(12580160-12580237)
chr5 (113-190)||(16844558-16844635)
chr5 (166-210)||(22859685-22859729)
chr5 (114-190)||(39963934-39964010)
chr5 (114-178)||(39981617-39981681)
chr5 (114-178)||(40417404-40417468)
[»] chr7 (15 HSPs)
chr7 (95-224)||(44073476-44073605)
chr7 (105-190)||(21144544-21144629)
chr7 (164-224)||(41170491-41170551)
chr7 (138-210)||(44736664-44736736)
chr7 (109-224)||(32555747-32555862)
chr7 (164-224)||(18793691-18793751)
chr7 (114-190)||(25685292-25685368)
chr7 (118-178)||(32420356-32420416)
chr7 (163-210)||(28249019-28249066)
chr7 (114-224)||(49103139-49103249)
chr7 (114-178)||(5034091-5034155)
chr7 (118-190)||(22166057-22166129)
chr7 (118-190)||(22224764-22224836)
chr7 (114-190)||(25072684-25072760)
chr7 (113-189)||(41937807-41937883)
[»] chr2 (8 HSPs)
chr2 (114-210)||(5712561-5712657)
chr2 (106-224)||(7598927-7599045)
chr2 (114-210)||(32700611-32700707)
chr2 (114-190)||(39848543-39848619)
chr2 (142-224)||(12677793-12677875)
chr2 (164-210)||(36758174-36758220)
chr2 (118-190)||(43898074-43898146)
chr2 (114-190)||(16054965-16055041)
[»] chr4 (23 HSPs)
chr4 (92-210)||(49225789-49225910)
chr4 (100-224)||(32526365-32526489)
chr4 (107-224)||(52973685-52973802)
chr4 (114-189)||(4435275-4435350)
chr4 (118-189)||(27292455-27292526)
chr4 (119-222)||(30920357-30920460)
chr4 (114-190)||(23620968-23621044)
chr4 (107-190)||(7912874-7912957)
chr4 (124-210)||(24014514-24014600)
chr4 (124-210)||(43024711-43024797)
chr4 (100-189)||(7997327-7997416)
chr4 (113-178)||(37244097-37244162)
chr4 (114-210)||(36105754-36105850)
chr4 (100-187)||(52264304-52264391)
chr4 (134-224)||(11432454-11432544)
chr4 (114-224)||(22319974-22320084)
chr4 (130-224)||(34373617-34373711)
chr4 (140-189)||(41819318-41819367)
chr4 (114-190)||(26660120-26660196)
chr4 (114-190)||(34510382-34510458)
chr4 (151-210)||(38076341-38076398)
chr4 (108-156)||(42237611-42237659)
chr4 (106-178)||(50528842-50528914)
[»] chr3 (10 HSPs)
chr3 (114-210)||(31132977-31133073)
chr3 (116-224)||(43242041-43242148)
chr3 (114-182)||(27483380-27483448)
chr3 (124-224)||(34008404-34008504)
chr3 (107-210)||(36159162-36159266)
chr3 (114-210)||(44890657-44890753)
chr3 (117-210)||(33458639-33458732)
chr3 (139-224)||(43946676-43946761)
chr3 (124-224)||(11836910-11837010)
chr3 (114-178)||(21523861-21523925)
[»] chr1 (20 HSPs)
chr1 (136-224)||(42323430-42323518)
chr1 (113-224)||(11751627-11751738)
chr1 (95-190)||(23757292-23757387)
chr1 (114-189)||(30562268-30562343)
chr1 (113-211)||(10158005-10158103)
chr1 (107-188)||(41438337-41438419)
chr1 (167-224)||(35879675-35879732)
chr1 (114-190)||(47295753-47295829)
chr1 (95-190)||(7287255-7287350)
chr1 (114-221)||(23981410-23981517)
chr1 (111-190)||(25412324-25412403)
chr1 (114-224)||(2759011-2759121)
chr1 (114-224)||(6213099-6213209)
chr1 (113-190)||(642725-642802)
chr1 (113-190)||(3839366-3839443)
chr1 (109-210)||(11862547-11862648)
chr1 (167-208)||(18379255-18379296)
chr1 (114-190)||(4362196-4362272)
chr1 (114-222)||(4402201-4402309)
chr1 (114-178)||(45339072-45339136)
[»] chr8 (13 HSPs)
chr8 (113-190)||(21019752-21019829)
chr8 (114-190)||(22738597-22738673)
chr8 (114-205)||(9552506-9552596)
chr8 (95-224)||(10710114-10710243)
chr8 (114-190)||(30469370-30469446)
chr8 (114-190)||(35458783-35458859)
chr8 (114-190)||(40691164-40691240)
chr8 (142-224)||(33437291-33437373)
chr8 (118-224)||(38996091-38996197)
chr8 (118-224)||(44602113-44602219)
chr8 (114-155)||(17006323-17006364)
chr8 (114-155)||(17570884-17570925)
chr8 (114-190)||(31587981-31588057)
[»] scaffold0330 (1 HSPs)
scaffold0330 (114-188)||(11006-11080)
[»] chr6 (5 HSPs)
chr6 (142-210)||(10265803-10265871)
chr6 (134-210)||(10667581-10667657)
chr6 (114-224)||(2803833-2803944)
chr6 (134-224)||(9104381-9104471)
chr6 (114-167)||(33011614-33011667)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 4386165 - 4385944
Alignment:
Q  18 ggtggaagtagactagttcgaactagactttgtattttcaagatttaagtctggtttgttgaaagtttgatatgacatgttaaaaaatatattttttatg 117  Q
    ||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||    
T  4386165 ggtggaaatagactagatcgaactagactttatattttcaagacttaagtctggttcgttgaaagtctgatatgacatgttaaaaaacatattttctatg 4386066  T
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattattta 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4386065 aacatttttaattaaataatatgatctaagtttaaataaaatagtaaactaatagatcaatgatattaaactctttcttgatatttaacatgattattta 4385966  T
Q  218 gagaattagtcataaattatat 239  Q
    ||||||||||||||||||||||    
T  4385965 gagaattagtcataaattatat 4385944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 18731234 - 18731126
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    ||||||||||| | | ||||||||   ||||||| ||||||| | |||| ||||||||||||||||||||||||||  || ||||||||||||| ||       
T  18731234 tatgaacatttgttaataaataatgcaatctaagcttaaatagattagtgaactaatagatcaatgatattaaact--tttttgatatttaacacgaagt 18731137  T
Q  214 tttagagaatt 224  Q
    |||||||||||    
T  18731136 tttagagaatt 18731126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 2823637 - 2823527
Alignment:
Q  93 catgttaaaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactcct 192  Q
    |||||| |||| | |||||  |||||||||| |||| ||| |||| |||| |||| ||||||||||||   ||||||| |||||||||||||||||||      
T  2823637 catgtttaaaagtttatttcatatgaacattattaaataagtaatgtgatataaggttaaataaactaacgaactaatggatcaatgatattaaactctc 2823538  T
Q  193 tcttgatattt 203  Q
    | |||||||||    
T  2823537 ttttgatattt 2823527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 35412360 - 35412454
Alignment:
Q  116 tgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||| ||||| ||| ||||||||||||||||| | || |||||| |||||||| |||||||  |||||||| | | || |||||||||||||    
T  35412360 tgaacatctttaaataagtaatatgatctaagtttgagtagactagtgaactaataaatcaatgggattaaactaccttttcatatttaacatga 35412454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 11778635 - 11778688
Alignment:
Q  155 aaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacat 208  Q
    ||||||| ||||||||||||||||||||||||||||  | ||||||||||||||    
T  11778635 aaactagcaaactaatagatcaatgatattaaactctcttttgatatttaacat 11778688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 14830585 - 14830657
Alignment:
Q  106 atattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    |||| |||||||||||| ||||| |||  ||||||||||||||||||||  ||||| |||||||||| |||||    
T  14830585 atatattttatgaacatctttaagtaagcaatatgatctaagtttaaatggactagcaaactaatagttcaat 14830657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 15577828 - 15577939
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactcc-ttcttgatatttaacatgatt 212  Q
    ||||||||||||||| ||  |||| |||||||||||||| ||  ||||| ||||||||  ||||  | |||||||||| || || ||||||||||||| |    
T  15577828 tatgaacatttttaaataggtaatgtgatctaagtttaattagtctagttaactaataactcaacaagattaaactcctttttttatatttaacatgaat 15577927  T
Q  213 atttagagaatt 224  Q
     |||||||||||    
T  15577928 ttttagagaatt 15577939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 28207442 - 28207364
Alignment:
Q  112 tttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||  |||||  ||||||||| ||||| | |||||||||    
T  28207442 tttatgaacatttttaaataagcaatgtgatctaagtttaaatggactagcgaactaatagttcaattaaattaaactc 28207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 6391568 - 6391492
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| |||||  |||||||| |||||| | |||||||||    
T  6391568 tatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 6391492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 817904 - 817844
Alignment:
Q  163 aaactaatagatcaatgatattaaactccttcttgatatttaacatga-ttatttagagaatt 224  Q
    |||||||| ||||||||| |||||||||  |||||||||||||||||| || |||||||||||    
T  817904 aaactaatggatcaatgagattaaactc--tcttgatatttaacatgatttttttagagaatt 817844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 38876622 - 38876733
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaata-gatcaatgatattaaactccttcttgatatttaacatgatt 212  Q
    ||||||||| ||||| |||| |||  |||||||||||||||| || || |||||||||  |||||| | ||||||||| || |||||| | ||||||| |    
T  38876622 tatgaacatctttaaataaacaatgagatctaagtttaaatagaccagcaaactaatattatcaattagattaaactcttttttgataatcaacatgagt 38876721  T
Q  213 atttagagaatt 224  Q
     |||||| ||||    
T  38876722 ttttagaaaatt 38876733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 42108511 - 42108626
Alignment:
Q  109 ttttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacat 208  Q
    |||| ||| ||||| ||||| |||  ||||||||| ||||||||||| |||||  |||||||| |||||| | |||||||||  | |||||| | |||||    
T  42108511 ttttgtattaacatctttaaataagcaatatgatccaagtttaaatagactagcgaactaatatatcaattagattaaactctcttttgataatcaacat 42108610  T
Q  209 gattatttagagaatt 224  Q
    || | ||||| |||||    
T  42108611 gaatttttagggaatt 42108626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 12580237 - 12580160
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||| ||||| |||  ||| ||||||||||||||||  |||||  ||||||||| ||||| | |||||||||    
T  12580237 ttatgaacatctttaaataagcaatgtgatctaagtttaaatggactagcgaactaatagttcaattagattaaactc 12580160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 16844635 - 16844558
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||| ||||| |||  ||| ||||||||||||||||  |||||  ||||||||| ||||| | |||||||||    
T  16844635 ttatgaacatctttaaataagaaatgtgatctaagtttaaatggactagcgaactaatagttcaattagattaaactc 16844558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 22859729 - 22859685
Alignment:
Q  166 ctaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||    
T  22859729 ctaatagatcaatgatattaaactctcttttgatatttaatatga 22859685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 39963934 - 39964010
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| ||| |||||| ||||||||||||||| ||||   |||||||| |||||  | |||||||||    
T  39963934 tatgaacatctttaaataagtaatataatctaagtttaaatagactaacgaactaataaatcaactagattaaactc 39964010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 39981617 - 39981681
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||| ||||| |||  ||| ||||| ||||||||||| |||||| |||||||| ||||||    
T  39981617 tatgaacatatttaaataagcaatgtgatcgaagtttaaatagactagtgaactaatatatcaat 39981681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 40417468 - 40417404
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||| ||||| |||  ||| ||||| ||||||||||| |||||| |||||||| ||||||    
T  40417468 tatgaacatctttaaataagcaatgtgatcgaagtttaaatagactagtgaactaatatatcaat 40417404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 44073605 - 44073476
Alignment:
Q  95 tgttaaaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttc 194  Q
    |||| ||||| ||||||  |||||| |||||||| ||| ||||||||| | ||||| |||| | |||  |||||||||| |||||  |||||||||| |     
T  44073605 tgtttaaaaacatatttcatatgaatatttttaaataagtaatatgatatgagtttgaatagaatagcgaactaatagaccaatgcgattaaactccctt 44073506  T
Q  195 ttgatatttaacatgattatttagagaatt 224  Q
    |||||||||||||||||||||| |||||||    
T  44073505 ttgatatttaacatgattatttggagaatt 44073476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 21144629 - 21144544
Alignment:
Q  105 tatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| || ||||||||| ||||| ||  |||| |||| |||||||||||| |||||| ||||||||||||||| | |||||||||    
T  21144629 tatatgttatatgaacatctttaaatacttaatgtgatataagtttaaatagactagtgaactaatagatcaattagattaaactc 21144544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 41170551 - 41170491
Alignment:
Q  164 aactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    |||||||||||||| || ||||||||| || |||||||||||||||| | |||||||||||    
T  41170551 aactaatagatcaacgagattaaactcttttttgatatttaacatgaatttttagagaatt 41170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 44736736 - 44736664
Alignment:
Q  138 atgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    |||||||||| ||||||| || || ||| ||||||||||||| ||||||||||  | ||||||||||||||||    
T  44736736 atgatctaagattaaatagacgagcaaattaatagatcaatggtattaaactctcttttgatatttaacatga 44736664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 32555862 - 32555747
Alignment:
Q  109 ttttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacat 208  Q
    |||| ||||||||||||||| |||  ||| ||||||||||||||||| |||||| ||| |||| |||||| | ||| |||||  | |||||| | |||||    
T  32555862 ttttatatgaacatttttaaataagcaatgtgatctaagtttaaatagactagtgaacaaatatatcaattagatttaactctcttttgataatcaacat 32555763  T
Q  209 gattatttagagaatt 224  Q
    || | ||||| |||||    
T  32555762 gaatttttagggaatt 32555747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 18793691 - 18793751
Alignment:
Q  164 aactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    ||||||||||||||||  |||||||||  | |||||||||||||||| | |||||||||||    
T  18793691 aactaatagatcaatgcgattaaactctcttttgatatttaacatgaatttttagagaatt 18793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 25685292 - 25685368
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||| || ||||| |||  ||||||||||||||||||||| |||||  |||||||| |||||| | |||||||||    
T  25685292 tatgaatatatttaaataagcaatatgatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 25685368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 32420356 - 32420416
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||||| |||  ||| ||||||||||||||| ||||||| ||||||||| ||||||    
T  32420356 aacatttttaaataagcaatgtgatctaagtttaaacaaactagcaaactaatatatcaat 32420416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 28249066 - 28249019
Alignment:
Q  163 aaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    |||||||||||||||| | ||||||||| || ||||||||||||||||    
T  28249066 aaactaatagatcaattagattaaactcttttttgatatttaacatga 28249019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 49103249 - 49103139
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    ||||||||| ||||| ||| ||||||||| |||||||||||| || |  ||| || || |||||| | |||||| |||   |||||||||||||| | |     
T  49103249 tatgaacatatttaaataagtaatatgatttaagtttaaatagaccatcaaattactaaatcaataaaattaaattccaatttgatatttaacataaatt 49103150  T
Q  214 tttagagaatt 224  Q
    |||||||||||    
T  49103149 tttagagaatt 49103139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 5034091 - 5034155
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||| ||||| |||  ||| ||||| ||||||||||| |||||  |||||||||||||||    
T  5034091 tatgaacatatttaaataagcaatgtgatcaaagtttaaatagactagcgaactaatagatcaat 5034155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 22166129 - 22166057
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| ||||| |||||||| |||| ||||||| ||| |||||   ||||||||||||||| | |||||||||    
T  22166129 aacatctttaaataaataatgtgatttaagttttaatcaactaacgaactaatagatcaattaaattaaactc 22166057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 22224836 - 22224764
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| ||||| |||||||| |||| ||||||| ||| |||||   ||||||||||||||| | |||||||||    
T  22224836 aacatctttaaataaataatgtgatttaagttttaatcaactaacgaactaatagatcaattaaattaaactc 22224764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 25072684 - 25072760
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| ||| |||| ||||  ||| ||||||| ||||   | |||||||||||||||||||||||||    
T  25072684 tatgaacatctttaaataagtaatgtgattcaaggttaaatagactaacgagctaatagatcaatgatattaaactc 25072760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 41937883 - 41937807
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    |||||||||| ||||| |||| |||  ||| |||||||||||| |||||  | ||||||| ||||| ||||||||||    
T  41937883 ttatgaacatctttaaataaacaatgcgatttaagtttaaatagactagagatctaatagttcaattatattaaact 41937807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 5712657 - 5712561
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||| ||||| ||| |||| ||||||||| ||||||| ||||| ||  ||||||||||||||||||||||||  | ||||||||||||||||    
T  5712657 tatgaacatatttaaataagtaatgtgatctaaggttaaatagactagcaagttaatagatcaatgatattaaactctcttttgatatttaacatga 5712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 7598927 - 7599045
Alignment:
Q  106 atattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaa 205  Q
    ||||||| ||||||||| ||||| ||| |||  |||||| | ||| |||| ||||   |||||||| |||||||  ||||| | || | |||||||||||    
T  7598927 atattttatatgaacatatttaaataagtaacgtgatctgaatttgaatagactatcgaactaatatatcaatgtgattaagcccccttttgatatttaa 7599026  T
Q  206 catgattatttagagaatt 224  Q
    |||||||||||||||||||    
T  7599027 catgattatttagagaatt 7599045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 32700611 - 32700707
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||| ||||| ||| |||| ||||  ||| ||||||| |||||  |||||||| ||||||||||||||||||  | | ||||||||||||||    
T  32700611 tatgaacatctttaaataagtaatgtgattcaaggttaaatagactagcgaactaataaatcaatgatattaaactctctttcgatatttaacatga 32700707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 39848619 - 39848543
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| ||| |||| ||||  ||||||||||| |||||  ||||||||||||| |||||||||||||    
T  39848619 tatgaacatctttaaataagtaatgtgattcaagtttaaatagactagcgaactaatagatcagtgatattaaactc 39848543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 12677875 - 12677793
Alignment:
Q  142 tctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    ||||| |||||||||||||||  ||||||| ||||| || ||||||||  || |||||||||||||||| | |||| ||||||    
T  12677875 tctaaatttaaataaactagtggactaatatatcaacgagattaaacttttttttgatatttaacatgaatttttaaagaatt 12677793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 36758174 - 36758220
Alignment:
Q  164 aactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||    
T  36758174 aactaatagatcaatgatattaaactctcttttgatatttaacatga 36758220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 43898074 - 43898146
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| ||||| |||| ||| |||||||||||||||||  |||| ||||||||| |||||| | |||||||||    
T  43898074 aacatctttaaataaacaatgtgatctaagtttaaatagtctagcaaactaatatatcaattagattaaactc 43898146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 16054965 - 16055041
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||| | |||| ||| | ||||||||||||||| |||||  |||||||| |||||| | |||||||||    
T  16054965 tatgaacatctttgaataaacaatgtaatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 16055041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 49225910 - 49225789
Alignment:
Q  92 acatgttaaaaaatatattttttatgaacatttttaattaaa-taatatgatctaagtttaaataaactagtaaacta--atagatcaatgatattaaac 188  Q
    ||||||| ||||| ||||||| |||||| ||||||||  ||| |||||||||||||||||||||||||||| ||| ||  |||||||||||  |||||||    
T  49225910 acatgtttaaaaacatattttatatgaagatttttaaaaaaaataatatgatctaagtttaaataaactagcaaattaatatagatcaatgtgattaaac 49225811  T
Q  189 tccttcttgatatttaacatga 210  Q
    ||  | ||||||||||| ||||    
T  49225810 tctattttgatatttaatatga 49225789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 32526365 - 32526489
Alignment:
Q  100 aaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgat 199  Q
    ||||||||||||  ||||||||  ||||| ||| |||   |||||||||||||||| | ||| ||||||||| |||||| | |||||||||  | |||||    
T  32526365 aaaaatatatttcatatgaacaaatttaaataagtaacgcgatctaagtttaaatagattagcaaactaataaatcaataagattaaactcgcttttgat 32526464  T
Q  200 atttaacatgattatttagagaatt 224  Q
    ||||||||||| | |||||||||||    
T  32526465 atttaacatgaatttttagagaatt 32526489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 52973685 - 52973802
Alignment:
Q  107 tattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaac 206  Q
    |||||| | ||||||| ||||| ||| |||| ||||||||||| ||||| |||||  ||||||||||||||||  |||||| | | | |||||| |||||    
T  52973685 tattttatttgaacatctttaaataagtaatgtgatctaagttaaaatagactagcgaactaatagatcaatgtgattaaatttccttttgataattaac 52973784  T
Q  207 atgattatttagagaatt 224  Q
    |||| | |||||||||||    
T  52973785 atgaatgtttagagaatt 52973802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 4435350 - 4435275
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    ||||||||| ||||| |||| ||| |||| |||||||||||| ||||| |||||||||||||||| | ||||||||    
T  4435350 tatgaacatctttaaataaacaatgtgatataagtttaaatagactagcaaactaatagatcaattagattaaact 4435275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 27292526 - 27292455
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    ||||| ||||| ||| |||  |||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  27292526 aacatctttaaataagtaacgtgatctaagtttaactaaactatgaaactaatagatcaatgatattaaact 27292455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 30920460 - 30920357
Alignment:
Q  119 acatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttag 218  Q
    |||| ||||| ||| ||||  |||||||| ||||||||| |||| |||||||| |||||| |||||||||||  | ||||||||||| |||||  |||||    
T  30920460 acatctttaaataagtaatgcgatctaaggttaaataaattagtgaactaatatatcaataatattaaactctcttttgatatttaatatgatgttttag 30920361  T
Q  219 agaa 222  Q
    ||||    
T  30920360 agaa 30920357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 23621044 - 23620968
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| ||||| ||| |||||||||||| | |||||||||    
T  23621044 tatgaacatatttaaataagcaatgtgatctaagtttaaatagactagcaaattaatagatcaattagattaaactc 23620968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 7912874 - 7912957
Alignment:
Q  107 tattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| ||||||||||||||||||||  ||| | ||||||||||||||| | |||  |||||||| |||||| | |||||||||    
T  7912874 tatttcttatgaacatttttaattaagcaatgttatctaagtttaaatagattagcgaactaatatatcaattagattaaactc 7912957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 24014514 - 24014600
Alignment:
Q  124 tttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||| ||| ||||||||||||| |||||||| ||||  ||||||||||||||||   ||||||||   | ||||||||||||||||    
T  24014514 tttaaataagtaatatgatctaaatttaaatagactaacaaactaatagatcaatatgattaaacttaattttgatatttaacatga 24014600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 43024797 - 43024711
Alignment:
Q  124 tttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||| |||||||| ||||||||||||||||| |||   |||||||||||| ||||| ||||||||   | || |||||||||||||    
T  43024797 tttaaataaataatgtgatctaagtttaaatagacttccaaactaatagattaatgagattaaactttgttttaatatttaacatga 43024711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 7997416 - 7997327
Alignment:
Q  100 aaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    ||||| ||||||  ||||||||  ||||| |||||||||||||  |  |||||||||| || |||||||||| |||||||| ||||||||    
T  7997416 aaaaacatatttcatatgaacaagtttaaataaataatatgattcatatttaaataaattaataaactaataaatcaatgaaattaaact 7997327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 37244162 - 37244097
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    |||||||||||||||| |||  ||| ||||  |||||||||||||||||| ||| |||||||||||    
T  37244162 ttatgaacatttttaaataagcaatgtgatgcaagtttaaataaactagtgaacaaatagatcaat 37244097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 36105754 - 36105850
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||||||||| ||  |||| ||||  ||||||||||| ||||   |||||||| |||||||| |||||||||  | ||||||||| ||||||    
T  36105754 tatgaacatttttaaatatttaatgtgattcaagtttaaatagactaacgaactaatatatcaatgagattaaactctcttttgatattttacatga 36105850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 52264304 - 52264391
Alignment:
Q  100 aaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaa 187  Q
    ||||| ||||||  ||||||||| ||| | ||| |||| |||| ||||||||||||||||||  |||||||| || ||||| ||||||    
T  52264304 aaaaacatatttcatatgaacatctttgaataagtaatgtgatataagtttaaataaactagcgaactaataaattaatgagattaaa 52264391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 11432544 - 11432454
Alignment:
Q  134 taatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    |||| ||||||||||||||||| | |||  |||||||| |||||| | |||||||||  | |||||| | ||||||| | |||||||||||    
T  11432544 taatgtgatctaagtttaaatagattagcgaactaatatatcaattaaattaaactctcttttgataatcaacatgaatttttagagaatt 11432454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 22319974 - 22320084
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    |||||| || ||||| |||| ||  |||| |||||||||||| ||||| ||||||||| ||||||   ||||||||| || |||||| | ||||||| |     
T  22319974 tatgaatatgtttaaataaacaacgtgatataagtttaaatagactagcaaactaatatatcaatttgattaaactcttttttgataatcaacatgaatt 22320073  T
Q  214 tttagagaatt 224  Q
    |||||| ||||    
T  22320074 tttagaaaatt 22320084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 34373617 - 34373711
Alignment:
Q  130 taaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    ||||||||| ||| ||| |||||||| || |  |||||||||||| ||||  ||| |||||| | || ||||||||||||| | |||||||||||    
T  34373617 taaataataagatataaatttaaatagaccaacaaactaatagattaatgtgattcaactccctattaatatttaacatgaatttttagagaatt 34373711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 41819367 - 41819318
Alignment:
Q  140 gatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    |||||||||||||||| ||||| ||||||||| |||||| | ||||||||    
T  41819367 gatctaagtttaaatagactagcaaactaatatatcaattagattaaact 41819318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 26660120 - 26660196
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||| ||| ||||| ||| |||| ||||| ||| ||||||| |||||| | |||||| |||||| |||||||||||    
T  26660120 tatgatcatctttaaataagtaatgtgatccaaggttaaatagactagtgagctaataaatcaataatattaaactc 26660196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 34510382 - 34510458
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| | ||||||||||||||| |||||  |||||||| |||||| | |||||||||    
T  34510382 tatgaacatctttaaataagcaatgtaatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 34510458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 38076398 - 38076341
Alignment:
Q  151 aaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||| |||| | ||||||||||  |||||||||||||||  ||||||||||||||||||    
T  38076398 aaatagactaatgaactaatagactaatgatattaaactc--tcttgatatttaacatga 38076341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 42237659 - 42237611
Alignment:
Q  108 attttttatgaacatttttaattaaataatatgatctaagtttaaataa 156  Q
    ||||| ||| ||||||||||| ||| |||||| ||||||||||||||||    
T  42237659 attttatattaacatttttaaataactaatataatctaagtttaaataa 42237611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 50528914 - 50528842
Alignment:
Q  106 atattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    |||||| |||||||||| ||||| ||| || | |||| |||||||||||| ||||  ||||||||| ||||||    
T  50528914 atatttcttatgaacatctttaaataactattctgatttaagtttaaatagactatcaaactaatatatcaat 50528842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 31132977 - 31133073
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc-cttcttgatatttaacatga 210  Q
    ||||||||| ||||| ||| |||| ||||||||||||||||| ||||  |||||||||||||||||| ||||||||| ||| ||| ||||||||||||    
T  31132977 tatgaacatctttaaataagtaatgtgatctaagtttaaatatactatcaaactaatagatcaatgagattaaactctctttttg-tatttaacatga 31133073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 43242041 - 43242148
Alignment:
Q  116 tgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatt 215  Q
    ||||||| ||||| ||| || | ||||||||||||||||| | ||| |||||||||||||||||  ||||| |||| | |||||||||||||||| | ||    
T  43242041 tgaacatgtttaaataagtagtgtgatctaagtttaaatagattag-aaactaatagatcaatgtgattaatctcccttttgatatttaacatgagtttt 43242139  T
Q  216 tagagaatt 224  Q
    || ||||||    
T  43242140 taaagaatt 43242148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 27483448 - 27483380
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgata 182  Q
    ||||||||| ||||| ||| |||| |||| |||| ||||||| |||||| | |||||||||||||||||    
T  27483448 tatgaacatatttaaataagtaatgtgatttaagattaaatagactagtgagctaatagatcaatgata 27483380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 34008504 - 34008404
Alignment:
Q  124 tttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaat 223  Q
    ||||| ||| |||||||||| | ||||||||||  ||  ||||||||| | ||||||||| ||||||| | || |||||||||||||   ||||||||||    
T  34008504 tttaaataagtaatatgatcaatgtttaaataagttaacaaactaataaaccaatgatatcaaactcccttttaatatttaacatgacattttagagaat 34008405  T
Q  224 t 224  Q
    |    
T  34008404 t 34008404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 36159162 - 36159266
Alignment:
Q  107 tattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttctt-gatatttaa 205  Q
    |||||| ||||||||| ||||| ||| |||||||||| ||| |||||||  ||||  | |||||| |||||| ||||||||||| || ||  ||||||||    
T  36159162 tattttatatgaacatatttaaataagtaatatgatccaagattaaatagcctagcgagctaatatatcaattatattaaactcttttttcaatatttaa 36159261  T
Q  206 catga 210  Q
    |||||    
T  36159262 catga 36159266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 44890657 - 44890753
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||| ||||| ||| |||| ||||  ||| ||||||| |||||  |  ||||||||||||||||||||||||  | | ||||||||||||||    
T  44890657 tatgaacatctttaaataagtaatgtgattcaaggttaaatagactagcgagataatagatcaatgatattaaactctctttcgatatttaacatga 44890753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 33458732 - 33458639
Alignment:
Q  117 gaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||||||  || |||| |||| |||||||||| | |||||| |||||||| ||||| || ||||||||   | ||| ||||||||||||    
T  33458732 gaacatttttaaagaagtaatgtgatttaagtttaaagagactagtgaactaatatatcaacgaaattaaactttcttttggtatttaacatga 33458639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 43946761 - 43946676
Alignment:
Q  139 tgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    |||| |||||||||||| |||   ||||||||| |||||| | |||||||||| | |||| |||||| |||| | |||||||||||    
T  43946761 tgatttaagtttaaatagactgacaaactaataaatcaataacattaaactccattttgacatttaatatgaatttttagagaatt 43946676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 11837010 - 11836910
Alignment:
Q  124 tttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaat 223  Q
    ||||| ||| |||| ||||| ||| ||||||| |||||  | |||||| ||||||||||||||||||  | | |||||||||||| |   ||||||||||    
T  11837010 tttaaataagtaatgtgatcaaaggttaaatagactagcgagctaatatatcaatgatattaaactctctttcgatatttaacatcaagttttagagaat 11836911  T
Q  224 t 224  Q
    |    
T  11836910 t 11836910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 21523925 - 21523861
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| |||||  |||||||| ||||||    
T  21523925 tatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatatatcaat 21523861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 42323430 - 42323518
Alignment:
Q  136 atatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    ||||||| || ||||||||| ||||| | |||||||||||||||| |||||| ||  | |||||||||||||||||| | |||||||||    
T  42323430 atatgatatatgtttaaatagactagcatactaatagatcaatgagattaaattctcttttgatatttaacatgattttatagagaatt 42323518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 11751738 - 11751627
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatt 212  Q
    |||||||||| ||||  |||| ||| ||||||||||||||||| || || |||||||||||||||| | |||||||||  | |||||| | |||||||      
T  11751738 ttatgaacatctttacataaacaatgtgatctaagtttaaatagaccagcaaactaatagatcaattagattaaactctcttttgataatcaacatgagg 11751639  T
Q  213 atttagagaatt 224  Q
     |||||||||||    
T  11751638 ttttagagaatt 11751627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 23757387 - 23757292
Alignment:
Q  95 tgttaaaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||| |||||| |||||| ||||||||| ||||| |||  ||| || ||||||||||||||||||||  ||||||||||| ||||| | |||||||    
T  23757387 tgtttaaaaatctattttatatgaacatctttaaataatgaatgtggtctaagtttaaataaactagcgaactaatagataaatgagactaaactc 23757292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 30562268 - 30562343
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaact 189  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| ||||| ||||||||| |||||| ||||||||||    
T  30562268 tatgaacatctttaaataatcaatgtgatctaagtttaaatagactagcaaactaatatatcaattatattaaact 30562343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 10158103 - 10158005
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgat 211  Q
    |||| ||||| ||||| |||  ||| ||||||||||||||||| |||||||||||||||| ||||| | |||||||||  | |||||| | ||||||||    
T  10158103 ttattaacatctttaaataagcaatgtgatctaagtttaaatagactagtaaactaatagttcaattaaattaaactctattttgataatcaacatgat 10158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 41438337 - 41438419
Alignment:
Q  107 tattttttatgaacat-ttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaac 188  Q
    |||||| ||| ||||| |||||| ||||||||||||| || |||||||||| || |||||||||||||  ||||| |||||||    
T  41438337 tattttgtataaacatattttaaataaataatatgatatatgtttaaataacctcgtaaactaatagagaaatgagattaaac 41438419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 35879675 - 35879732
Alignment:
Q  167 taatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||   |||||||||||    
T  35879675 taatagagcaatgagattaaactcctttttgatatttaacatgacattttagagaatt 35879732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 47295829 - 47295753
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| |||||  |||||||| |||| | |||||||||||    
T  47295829 tatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatatatcatttatattaaactc 47295753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 7287350 - 7287255
Alignment:
Q  95 tgttaaaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||| ||||| |||| | |||||||||| ||||| |||  ||| ||||||||||||||||  |||| | ||||||||| ||||| | |||||||||    
T  7287350 tgtttaaaaacatatatcttatgaacatctttaaataagcaatgtgatctaagtttaaatggactaatgaactaatagttcaattaaattaaactc 7287255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 23981517 - 23981410
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    ||||| ||| ||||| ||| |||| |||| ||| |||||||| |||||  |||||||| || ||||| ||||||||||   ||||||||||| |||| |     
T  23981517 tatgatcatgtttaaataagtaatgtgatataaatttaaatagactagacaactaataaataaatgagattaaactcccatttgatatttaaaatgaatt 23981418  T
Q  214 tttagaga 221  Q
    ||||||||    
T  23981417 tttagaga 23981410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 25412403 - 25412324
Alignment:
Q  111 ttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||||| ||||| ||| |||| |||||||| |||||||  ||||  |||||||||| ||||| | |||||||||    
T  25412403 ttttatgaacatctttaaataagtaatgtgatctaaatttaaatggactaacaaactaatagttcaattaaattaaactc 25412324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 2759011 - 2759121
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    ||||||||| ||||| |||| ||| ||||||||||||||||  | |||  |||||||| |||||| | |||||||||  | |||||| ||| ||||| |     
T  2759011 tatgaacatatttaaataaacaatgtgatctaagtttaaattgattagcgaactaatatatcaattagattaaactctcttttgataattaccatgagtt 2759110  T
Q  214 tttagagaatt 224  Q
    ||||| |||||    
T  2759111 tttagggaatt 2759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 6213209 - 6213099
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    |||||||||||||||  |  |||| |||||||||||| |||  |||    ||||||||||||||| | | ||||||| || || ||||||||||||| |     
T  6213209 tatgaacatttttaaaaatgtaatgtgatctaagtttcaatcgacttacgaactaatagatcaataagaataaactcattttttatatttaacatgaatt 6213110  T
Q  214 tttagagaatt 224  Q
    |||||||||||    
T  6213109 tttagagaatt 6213099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 642802 - 642725
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||| | ||| |||  ||| ||||||||||||||||  |||||| ||||||||| ||||| | |||||||||    
T  642802 ttatgaacatctctaaataagcaatgtgatctaagtttaaatggactagtgaactaatagttcaattaaattaaactc 642725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 3839443 - 3839366
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||| ||||| |||  ||| ||||||||||||||| ||||||   ||||||||| ||||| | |||||||||    
T  3839443 ttatgaacatctttaaataagcaatgtgatctaagtttaaacaaactaacgaactaatagttcaattagattaaactc 3839366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 11862547 - 11862648
Alignment:
Q  109 ttttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacat 208  Q
    |||| ||||| ||| || || ||| |||| |||| ||| |||||||| ||||  ||||||||| |||||| ||||||| |||| | || |||||||||||    
T  11862547 ttttatatgagcatattcaaataattaatgtgatataaatttaaatagactaacaaactaatatatcaattatattaatctcccttttcatatttaacat 11862646  T
Q  209 ga 210  Q
    ||    
T  11862647 ga 11862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 18379296 - 18379255
Alignment:
Q  167 taatagatcaatgatattaaactccttcttgatatttaacat 208  Q
    |||||||||| |||||||||||||| | ||||||||||||||    
T  18379296 taatagatcattgatattaaactcccttttgatatttaacat 18379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 4362196 - 4362272
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||||||||| |||  ||| |||| |||||||||||| ||||||  ||||||| || ||| | |||||||||    
T  4362196 tatgaacatttttaaataagcaatgtgatttaagtttaaatagactagtggactaatatataaattagattaaactc 4362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 4402309 - 4402201
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgatta 213  Q
    |||||||||||||||  || |||| |||  |||| ||||||||||||  ||||||||| |||||||  ||| || ||  | |||||||||||||||  |     
T  4402309 tatgaacatttttaaacaagtaatgtgaaataaggttaaataaactaacaaactaataaatcaatgtgattgaattctcttttgatatttaacatggatt 4402210  T
Q  214 tttagagaa 222  Q
    |||||||||    
T  4402209 tttagagaa 4402201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 45339072 - 45339136
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaat 178  Q
    ||||||||| ||| | |||  |||| |||||||||||||||| ||||| ||||||||| ||||||    
T  45339072 tatgaacatcttttaataagcaatacgatctaagtttaaatagactagcaaactaatatatcaat 45339136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 21019752 - 21019829
Alignment:
Q  113 ttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    |||||||||| ||||| |||  ||| ||||||||||||||||| |||||  ||||||||||||||| | |||||||||    
T  21019752 ttatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatagatcaattaaattaaactc 21019829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 22738597 - 22738673
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||||||||||||||||||||| |||||| |||||||| || ||| | |||||||||    
T  22738597 tatgaacatctttaaataaggaatatgatctaagtttaaatagactagtgaactaatatattaattagattaaactc 22738673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 9552506 - 9552596
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaa 205  Q
    ||||||||| ||||| |||| ||| ||||||||||||||||||||||   ||||||||||  ||||| ||||||| |||| || ||||||||    
T  9552506 tatgaacatatttaaataaacaatgtgatctaagtttaaataaactaacgaactaatagacgaatgagattaaac-ccttttttatatttaa 9552596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 10710243 - 10710114
Alignment:
Q  95 tgttaaaaaatatattttttatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttc 194  Q
    |||| ||||| ||||||| ||||||||| ||| | |||  ||| || |||| |||||| || ||||| ||||||||| |||||| | |||||||||  |     
T  10710243 tgtttaaaaacatattttatatgaacatattttaataagcaatgtgctctatgtttaagtagactagcaaactaatatatcaattaaattaaactctatt 10710144  T
Q  195 ttgatatttaacatgattatttagagaatt 224  Q
    |||||| | || |||||| |||||||||||    
T  10710143 ttgataatcaagatgattttttagagaatt 10710114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 30469370 - 30469446
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| |||||||||||| |||| ||||| ||||||||| |||||| | |||||||||    
T  30469370 tatgaacatctttaaataagcaatgtgatctaagtttgaatagactagcaaactaatatatcaattacattaaactc 30469446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 35458783 - 35458859
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||| ||||||| ||| |||| ||||| ||  ||||||| |||||  | |||||||||||||||||||||||||    
T  35458783 tatgaacgtttttaaataagtaatgtgatccaaagttaaatagactagcgagctaatagatcaatgatattaaactc 35458859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 40691164 - 40691240
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| |||||  |||||||| |||||| | |||||||||    
T  40691164 tatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 40691240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 33437291 - 33437373
Alignment:
Q  142 tctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    |||||||||||||| ||||| ||||||||| || ||||| ||| ||| || | || ||||||||||| | | |||||||||||    
T  33437291 tctaagtttaaatagactagaaaactaatatattaatgagattcaaccccctatttatatttaacataaatttttagagaatt 33437373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 38996197 - 38996091
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattattta 217  Q
    ||||||||||| |||  |||  ||| |||||||||||| |||||| |||||||| |||||| | ||||||||   | |||||| | ||||||| | ||||    
T  38996197 aacatttttaaataagcaatgcgatgtaagtttaaatagactagtgaactaatatatcaattagattaaactttcttttgataatcaacatgaattttta 38996098  T
Q  218 gagaatt 224  Q
    |||||||    
T  38996097 gagaatt 38996091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 44602219 - 44602113
Alignment:
Q  118 aacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattattta 217  Q
    ||||||||||| |||  |||  ||| |||||||||||| |||||| |||||||| |||||| | ||||||||   | |||||| | ||||||| | ||||    
T  44602219 aacatttttaaataagcaatgcgatgtaagtttaaatagactagtgaactaatatatcaattagattaaactttcttttgataatcaacatgaattttta 44602120  T
Q  218 gagaatt 224  Q
    |||||||    
T  44602119 gagaatt 44602113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 17006323 - 17006364
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaata 155  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  17006323 tatgaacatctttaagtaaacaatatgatctaagtttaaata 17006364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 17570925 - 17570884
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaata 155  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  17570925 tatgaacatctttaagtaaacaatatgatctaagtttaaata 17570884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 31588057 - 31587981
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactc 190  Q
    ||||||||| ||||| |||  ||| ||||||||||||||||| |||||  |||||||| || ||| | |||||||||    
T  31588057 tatgaacatctttaaataagcaatgtgatctaagtttaaatagactagcgaactaatatattaataagattaaactc 31587981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 11080 - 11006
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaac 188  Q
    ||||||||| ||||| |||  ||||||||||||||||||||| ||||  ||||||||| || ||| |||||||||    
T  11080 tatgaacatctttaaataagcaatatgatctaagtttaaatagactatcaaactaatatataaattatattaaac 11006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 10265871 - 10265803
Alignment:
Q  142 tctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    ||||||||| |||| ||||| ||||| |||||||||||| |||||||| |   ||||||||||||||||    
T  10265871 tctaagtttcaatatactagcaaacttatagatcaatgagattaaacttccatttgatatttaacatga 10265803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 10667581 - 10667657
Alignment:
Q  134 taatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatga 210  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||| | | |||||||  | |||||||| |||||||    
T  10667581 taatgtgatctaagtttaaatagactagcaaactcatagatcaattagaataaactctcttttgatattcaacatga 10667657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 2803833 - 2803944
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatg-att 212  Q
    |||||| || ||||| ||| |||| |||||||| |||||||| ||||| || |||||| |  || || ||||||| || | ||||||||||||||| |||    
T  2803833 tatgaatatctttaaataagtaatgtgatctaattttaaatatactagcaagctaataaactaaagagattaaacccccttttgatatttaacatgtatt 2803932  T
Q  213 atttagagaatt 224  Q
     |||||||||||    
T  2803933 ttttagagaatt 2803944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 9104471 - 9104381
Alignment:
Q  134 taatatgatctaagtttaaataaactagtaaactaatagatcaatgatattaaactccttcttgatatttaacatgattatttagagaatt 224  Q
    |||||||||||| ||| ||||| ||||| |||||||||||  ||||| ||| |||||| | |  ||||||||| ||| | |||||||||||    
T  9104471 taatatgatctacgttcaaatatactagcaaactaatagactaatgagattcaactccctatctatatttaacgtgaatttttagagaatt 9104381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 33011614 - 33011667
Alignment:
Q  114 tatgaacatttttaattaaataatatgatctaagtttaaataaactagtaaact 167  Q
    ||||||||| ||||| |||||||| |||| |||||||||||| ||||| |||||    
T  33011614 tatgaacatctttaaataaataatgtgatataagtttaaatagactagaaaact 33011667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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