View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_69 (Length: 237)
Name: NF20775_low_69
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36542197 - 36542417
Alignment:
| Q |
1 |
aacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggttaggtgaattcgagctagtttcaaggtcttctttgtatatttttagtata |
100 |
Q |
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||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
36542197 |
aacttgattgttcttgtaaaaaacatagcacaaccattgagttgtctggttaggtgaattcgagccagtttcaaggtcttctttgtatatttttagtaca |
36542296 |
T |
|
| Q |
101 |
gtgttaatttcttcggttctagctaaactctactaaaacaagccggataatggctcaaagaattgtaaaatcactcaaaggactgtcaaatgactcttaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36542297 |
gtgttaatttcttcagttctagctaaactctactaaaacaagcctgataatggctcaaaggattgtaaaatcactcaaaggactgtcaaatgactcttaa |
36542396 |
T |
|
| Q |
201 |
ggtgcactaaagacataatat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36542397 |
ggtgcactaaagacataatat |
36542417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 33782479 - 33782525
Alignment:
| Q |
40 |
agttgtctggttagg-tgaattcgagctagtttcaaggtcttctttg |
85 |
Q |
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|||||| |||||||| |||||| |||||||||||||||||||||||| |
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| T |
33782479 |
agttgtatggttagggtgaatttgagctagtttcaaggtcttctttg |
33782525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22449703 - 22449787
Alignment:
| Q |
1 |
aacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggttaggtgaattcgagctagtttcaaggtcttctttg |
85 |
Q |
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|||||||||| ||| |||||| | |||||| ||||| ||||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
22449703 |
aacttgattgatctagtaaaaaccttagcaccaccacagagttgtttggttaggtgaatttgagccggtttcaaggtcttctttg |
22449787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 22505501 - 22505364
Alignment:
| Q |
1 |
aacttgattgttcttttaaaaaacatagcacgaccactgagttgtctggttagg-tgaattcgagctagtttcaaggtcttctttgtatatttttagtat |
99 |
Q |
| |
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||||| |||| |||| |||||| ||||||||||| | |||||||||||||||| ||||||||||| ||||||| || ||| ||||||||| ||| |
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| T |
22505501 |
aacttcattgctcttgtaaaaagcatagcacgacta--gagttgtctggttagggtgaattcgagccggtttcaatgta--cttcgtatattttgagtgc |
22505406 |
T |
|
| Q |
100 |
agtgttaatttcttcggttctagctaaactctactaaaacaa |
141 |
Q |
| |
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| ||||||||||||| || | |||||||||||||||||||| |
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| T |
22505405 |
aatgttaatttcttcactttttgctaaactctactaaaacaa |
22505364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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